Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0377 ATGGCTCCTCCTACTAAGCCTCCTCCGATCAATATTGAACCTGAAAATTGCCCTGAAGCTGTGATGAATTGGTACAACATCACTTCACGTTTGAATATTGAACCTGAAAATTACAAGCGCCAATGTACATTAAGTAGAGACCTCTCCTCCCAAGCCAAGAAGCATCTTTGTTTTCTGGGTTGGAGGTTTTGGCACGCTGACAAGAAAAACAAGTGGGAGCTTCGTTACACTTCACCCATCACTGGCAAGAACTACATTTCACTCAGAAGGGCATGCCATGCTTGCATACAAGAAGGAGGCTGCAACAATGGAAACCCTCAAATTAATCTTCAACAACACAACAACAACAACAATGTTGATCAGAACCCTTCACCTTCTGCACCAAAGAAACCAAGGAAGTCCACCAACAAAAGAACGAGGGTATGCAAGAAAAGACAAAAGAGTGATGACGATGATGAATTGGGAGAAGCCTCTAGTTCTATGAATAATAATAATTATAAAAAAATGATGCGTGAGGCCGAGGCAACAAATGTTTCTGATCAGTCTTTAAAGCAGCAGCATCGTGGAGCAATTATCCCTTGGTTGATAGATAACAATGTGGTGGCTTTGTATTCATTGGTATTCTGCCGTGATGCAAATAACGTGGTCAAGAAAGGGAAACTATGGCGTAGTGGCATAGCTTGTGAATGCTGTGGCATGTTTTTCTCTCCCACTCGCTTTGAGGCTCATGCTGGGTGCCACAAGCACAGACCAAACGCCAGCATTTTCTTGGAAGATGGAAGGTCGTTGTTGGATTGTCAAAAAGAAGCCTTGAGTTCTCAGCAAAACAAGGTGCGTTCTTTAATAAAAGAAGAAGAAGAAGAAGAAAAGGATCACTGTGAGTATCAAAATGATAGCATTTGTGCTATTTGTTATTTTGGCGGTGAACTAGTGTTATGTGATCGATGCCCCTCTTCGTTTCACCTCAGTTGTTTGGGTTTAGAGCATGTTCCTGATGGCGATTGGTTCTGCCCAGCTTGTTGTTGCAAAGTATGCAAGGGGCCCAGATGCAATACAGAAGAAAATTGTGATGACCATGTGGATGCTAATAGAGTTCTGGTTTGTCATCAATGTGAGGGGAGATACCATATTGGGTGTTTGAAAGCTCTAACTTATACCAAGATGGGAAAGGATCAAGATCATGTTGATAATGAGAATGAGAATTGGTTCTGCAGTGGAGACTGTGAGAATATATTCTTAGCTTTGCAGAAGCTGGTGGGAAAAGCCATTAATGTTGTTGGTGAGGATAATGTAACTTGGACGTTGTTGAAGGCACTGAAAAAAGGTGAGAGCAAGCTTAGTGAGGCACTTAATGTTTTGCGTGAGTGTTTTAGTCCAGTCACTGATGCTTTCTTCGGGAGAGATATAATTTCTGATGTTGTTTTCAGTAGAGGTTCAGAACTCAATCGTTTGAACTTTTGTGGTTTTTATACTGTGATTTTAGAGAGGGAGGGGGAAGTAGTTTCTGTTGCCACTTTAAGGATTTTTGGCAAGAGGGTTGCTGAAATACCCTTTGTGGCTACCAGGGTGCAGTGTAGAAAACAAGGATTGTGTGGCATTTTAATGAATGAGATTGAGAAGCAGTTGACTTACTTGGGAGTAGAGGAGATTGTTCTGCCTTCCACGCCTAAGGTGATAGACACTTGGACGAACTCATTTGACTTTGAAAAGATGACACTCTCAGTTAAGTCAAAGTTTCTTGATCATGTTTTTCTGGACTTCGAGGATACCATCATGTGCCACAAACTACTAGTGGTGAAACAAACTGTTATATGA 1815 0.416 MAPPTKPPPINIEPENCPEAVMNWYNITSRLNIEPENYKRQCTLSRDLSSQAKKHLCFLGWRFWHADKKNKWELRYTSPITGKNYISLRRACHACIQEGGCNNGNPQINLQQHNNNNNVDQNPSPSAPKKPRKSTNKRTRVCKKRQKSDDDDELGEASSSMNNNNYKKMMREAEATNVSDQSLKQQHRGAIIPWLIDNNVVALYSLVFCRDANNVVKKGKLWRSGIACECCGMFFSPTRFEAHAGCHKHRPNASIFLEDGRSLLDCQKEALSSQQNKVRSLIKEEEEEEKDHCEYQNDSICAICYFGGELVLCDRCPSSFHLSCLGLEHVPDGDWFCPACCCKVCKGPRCNTEENCDDHVDANRVLVCHQCEGRYHIGCLKALTYTKMGKDQDHVDNENENWFCSGDCENIFLALQKLVGKAINVVGEDNVTWTLLKALKKGESKLSEALNVLRECFSPVTDAFFGRDIISDVVFSRGSELNRLNFCGFYTVILEREGEVVSVATLRIFGKRVAEIPFVATRVQCRKQGLCGILMNEIEKQLTYLGVEEIVLPSTPKVIDTWTNSFDFEKMTLSVKSKFLDHVFLDFEDTIMCHKLLVVKQTVI* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0377 604 MobiDBLite consensus disorder prediction 106 165 - -
Gso6g0377 604 SUPERFAMILY FYVE/PHD zinc finger 289 350 IPR011011 -
Gso6g0377 604 CDD NAT_SF 492 552 - -
Gso6g0377 604 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 10 598 - -
Gso6g0377 604 ProSiteProfiles Zinc finger PHD-type profile. 298 343 IPR019787 -
Gso6g0377 604 Pfam PHD-finger 300 342 IPR019787 -
Gso6g0377 604 Coils Coil 604 604 - -
Gso6g0377 604 Gene3D - 432 597 - -
Gso6g0377 604 SMART PHD_3 342 409 IPR001965 -
Gso6g0377 604 SMART PHD_3 300 341 IPR001965 -
Gso6g0377 604 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 477 557 IPR016181 -
Gso6g0377 604 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 364 IPR013083 -
Gso6g0377 604 Pfam Tify domain binding domain 219 270 IPR032308 -
Gso6g0377 604 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 598 - -
Gso6g0377 604 Coils Coil 264 291 - -
Gso6g0377 604 Pfam Acetyltransferase (GNAT) family 482 554 IPR000182 GO:0016407
Gso6g0377 604 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 434 590 IPR000182 GO:0016407
Gso6g0377 604 MobiDBLite consensus disorder prediction 106 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0377 Gso-Chr6 3517067 3518881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0377 129 545 PHD Transcription Factor Family AT5G58610 38.914 4.03e-87 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso6g0377 Acetyltransf_1 0.00016 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0377 - - gmx:102668789 1207.59