Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0373 ATGGAGATTTACCTGAGTGAGAATTTCGGAGATGTGAAGCCAAAGAACTCATCGGAAGAAGCGCTTCAGAGATGGAGGAAGGCTTGTTGGCTCGTTAAGAATCACAAGAGGAGGTTCCGTTTCACTGCTAATCTCTCCAAGAGATTCGAAGCTGAGGCTATTAGACGCTCCAATCAGGAGAAATTCAGAGTTGCAGTGTTGGTTTCACAAGCTGCTATTCAGTTTATCCACGGTCTAAATTTGTCGAGTGAGTACACTGTACCAGAAGAAGTTAAAGCAGCAGGCTTTGAAATTTGTGCTGATGAGCTGGGATCAATTGTTGAGGGACGTGATTCGAAGAAGTTGAAAAGTCATGGTGGGGTTGATGCTATCACAAACAAACTCAATACCTCAGTTGATGATGGTATATCAACATCTGAGCACTTGGTGAATCAGAGAAAAGAAATTTATGGAGTTAATAAATTCGCTGAAAGTCCAGCCCGTGGATTTTGGGTTTATGTATGGGAATCCCTTCAAGATACAACCCTCATGATACTTGCTGTCTGTGCCTTGGTCTCTTTGGTGGTTGGTATAATAATGGAAGGGTGGCCCAAGGGTGCACAGGATGGAATTGGTATTGTTGCAAGCATATTGCTTGTAGTGTTCGTCACTGCCACAAGTGACTACAGACAATCACTGCAGTTTAAGGATCTGGATAAAGAGAAGAAGAAAATTACAGTTCAGGTCACGAGAAATAGTTGTAGGCAGAAGCTTTCAATGTATGATCTGCTTCCTGGTGATATTGTCCATCTAAATATTGGAGATCAGGTCCCTGCCGATGGCCTTTTTGTGTCTGGTTTCTCTGTGTTAATAAATGAATCAAGCTTGACAGGAGAAAGTGAACCGGTGAATGTCAGTGAACTTAATCCTTTTCTTCTGTCTGGAACCAAAGTTCAAGATGGATCATGCAAGATGCTTGTGACTACTGTTGGAATGAGGACCCAGTGGGGTAAACTAATGGCTACTCTAAGTGAAGGGGGAGATGATGAAACACCTTTGCAGGTAAAGCTCAATGGTGTTGCTACCATTATTGGGAAAATAGGCCTCTTTTTCGCAGTTGTGACCTTTTCTGTGTTGGTCCAAGGGCTTTTTAGCCGCAAGCTGCGAGAGGGATCCCAATGGATGTGGTCTGGTGACGATGCAATGCAAATTGTGGAATTCTTTGCTATTGCTGTTACTATTGTTGTTGTGGCTGTTCCTGAAGGTTTACCTTTAGCTGTAACATTAAGCCTTGCTTTTGCAATGAAAAAGATGATGAATGATAAGGCACTTGTTCGTCACTTGGCTGCTTGTGAGACAATGGGATCTGCCACTACTATCTGCAGTGACAAGACTGGCACACTAACTACTAACCATATGACTGTTGTAAAAGCTTATATATGTGGGAAGATTAAAGAAGTAAATGGTTCTAAGGTCTACTCTGATTTCTCATCTGATATTCATGATTCTGCTCTAGCAATTCTACTTGAATCAATATTTAACAACACTGGAGGAGAAGTTGTCAAAAACAAAGATGAGAAGATTGAAATTCTAGGATCACCGACTGAGACTGCACTGTTGGAATTTGGGCTGTCACTTGGTGGTGATTTCCATAAGGAACGACAAAGGTCAAAACTTGTGAAAGTTGAGCCATTTAATTCTATAAAGAAGCGCATGGGGGTGGTTCTCCAGCTTCCTGATGGTGGTTTCAGAGCACATTGCAAAGGTGCCTCTGAAATAATTCTAGCTTCATGTGACAAAGTTGTGGACTCAAGTGGCGAGGTTGTTGCCCTCAATGAAGACTCCATAAATCACTTGAATAATATGATTGAAACATTTGCTGGTGAAGCTCTCCGAACACTTTGCCTTGCTTACTTGGATATTCATGATGAATTTTCTGTTGGAACTGCTATTCCTACTAGAGGTTACACTTGTATTGGAATTGTGGGTATTAAAGATCCAGTTCGCCCTGGTGTTCGAGAGTCAGTCGCCATTTGTAGGTCAGCTGGTATTGCTGTTAGGATGGTTACTGGAGACAACATAAATACAGCAAAGGCTATTGCTAGAGAATGTGGAATTTTAACAGATGGTATCGCAATTGAAGGCCCCGAGTTTCGTGAGAAGAGTGAGGAGGAGTTGCTTGATATCATTCCAAAAATTCAGGTAATGGCCCGATCTTCACCAATGGATAAGCATACCCTGGTGAAACACTTGAGGACAACATTTCAAGAGGTTGTTTCAGTAACTGGTGATGGTACAAATGATGCTCCAGCACTTCATGAAGCAGATATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTAGCAAAAGAAAGCGCTGATGTAATAATTCTAGATGATAACTTTTCGACTATTGTGACTGTAGCTAAATGGGGCCGCTCGGTCTACGTAAACATTCAGAAATTTGTGCAGTTTCAGCTAACTGTAAATGTTGTTGCTTTGATCGTCAATTTCTCTTCTGCTTGTTTGACTGGAAATGCTCCCCTCACTGCGGTTCAACTTCTATGGGTCAACATGATTATGGACACTCTTGGAGCACTTGCACTAGCCACTGAACCTCCTAACGAGGAGTTGATGAAAAGACCACCTGTTGGTAGGAAAGGAAACTTTATCAGTAATGTGATGTGGAGAAATATCTTGGGGCAGTCTATATATCAATTTGTTGTAATATGGTTCCTCCAGACCAGAGGAAAAGTAACGTTTCATCTTGATGGACCAGATTCTGATCTGATATTGAATACACTTATTTTCAACTCGTTTGTGTTCTGCCAGTTAGCCAGGAAAATTTGTGGATGCCTATTATTTTGTTGGTGA 2853 0.4175 MEIYLSENFGDVKPKNSSEEALQRWRKACWLVKNHKRRFRFTANLSKRFEAEAIRRSNQEKFRVAVLVSQAAIQFIHGLNLSSEYTVPEEVKAAGFEICADELGSIVEGRDSKKLKSHGGVDAITNKLNTSVDDGISTSEHLVNQRKEIYGVNKFAESPARGFWVYVWESLQDTTLMILAVCALVSLVVGIIMEGWPKGAQDGIGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKITVQVTRNSCRQKLSMYDLLPGDIVHLNIGDQVPADGLFVSGFSVLINESSLTGESEPVNVSELNPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLVQGLFSRKLREGSQWMWSGDDAMQIVEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKAYICGKIKEVNGSKVYSDFSSDIHDSALAILLESIFNNTGGEVVKNKDEKIEILGSPTETALLEFGLSLGGDFHKERQRSKLVKVEPFNSIKKRMGVVLQLPDGGFRAHCKGASEIILASCDKVVDSSGEVVALNEDSINHLNNMIETFAGEALRTLCLAYLDIHDEFSVGTAIPTRGYTCIGIVGIKDPVRPGVRESVAICRSAGIAVRMVTGDNINTAKAIARECGILTDGIAIEGPEFREKSEEELLDIIPKIQVMARSSPMDKHTLVKHLRTTFQEVVSVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYVNIQKFVQFQLTVNVVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNEELMKRPPVGRKGNFISNVMWRNILGQSIYQFVVIWFLQTRGKVTFHLDGPDSDLILNTLIFNSFVFCQLARKICGCLLFCW* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0373 950 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 113 942 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gso6g0373 950 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Gso6g0373 950 SFLD p-type atpase 436 807 IPR044492 -
Gso6g0373 950 Gene3D - 464 660 IPR023299 GO:0000166
Gso6g0373 950 PANTHER CALCIUM-TRANSPORTING ATPASE 4 942 - -
Gso6g0373 950 Gene3D - 17 77 - -
Gso6g0373 950 PRINTS H+-transporting ATPase (proton pump) signature 612 630 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso6g0373 950 PRINTS H+-transporting ATPase (proton pump) signature 755 771 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso6g0373 950 PRINTS H+-transporting ATPase (proton pump) signature 787 812 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso6g0373 950 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 665 IPR023299 GO:0000166
Gso6g0373 950 Pfam Cation transport ATPase (P-type) 515 594 - -
Gso6g0373 950 Gene3D - 451 800 IPR023214 -
Gso6g0373 950 Gene3D - 140 337 - -
Gso6g0373 950 PANTHER CATION TRANSPORTING ATPASE 4 942 - -
Gso6g0373 950 SUPERFAMILY Calcium ATPase, transduction domain A 238 334 IPR008250 -
Gso6g0373 950 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Gso6g0373 950 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
Gso6g0373 950 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
Gso6g0373 950 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
Gso6g0373 950 PRINTS P-type cation-transporting ATPase superfamily signature 755 774 - -
Gso6g0373 950 PRINTS P-type cation-transporting ATPase superfamily signature 779 791 - -
Gso6g0373 950 SMART Cation_ATPase_N_a_2 117 191 IPR004014 -
Gso6g0373 950 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 392 479 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso6g0373 950 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 724 836 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso6g0373 950 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 550 701 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso6g0373 950 Pfam E1-E2 ATPase 237 432 - -
Gso6g0373 950 Gene3D - 169 908 - -
Gso6g0373 950 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Gso6g0373 950 CDD P-type_ATPase_Ca_PMCA-like 143 888 - -
Gso6g0373 950 SFLD C1.7: P-type atpase like 436 807 - -
Gso6g0373 950 Pfam Cation transporting ATPase, C-terminus 840 939 IPR006068 -
Gso6g0373 950 SUPERFAMILY HAD-like 452 860 IPR036412 -
Gso6g0373 950 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 939 IPR023298 -
Gso6g0373 950 Pfam Cation transporter/ATPase, N-terminus 118 186 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0373 Gso-Chr6 3482967 3490374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0373 1 942 Primary Pumps ATPases AT1G27770 81.018 0.0 1557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0373 K01537 - gmx:547998 1825.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0395 4 3595675 3605910 Gso6g0373 6 3482967 3490374 GST