Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0356 ATGGCTCTGTTACACCGAGTCATGCACACTATCACTATACCATCCATGTATCAGCATCAGCGGTGGCAACATGCTTGGATGCTGCCTCCTCTCACCATTTGGATTTGTGTTTCAATCACACTCCGTTATGGTTATTACGGCGATTCTTGCATCCTGCTTGGCCCTGCCTCATCCCGTTTGATGAAGACCAGTTCTGTTTTTGTGAAGCAGCTTCAAGTGTCAAACAAGGACAATAATCAAGTTATTCTTCATGCCTTCAATGAGAAGCCCGAGTTAAGCTCCCAAACTAATTGGACAGTGTCAAATTTGTGTCTTGTTGAAGCGTATAAAAGCAAGGGAATTTCTTTGTGGTTAAATCAGGGCTCCACCATCCGTATGGGGTGGGAAGCACACACTACTAGTAGTTTGGATCAGCTACATGGGATGGTGATCAAAGGAGAAAAGAAGTTTAAACTGCCACAGGCTAAACAAACGAGCTTCCCCAATGCAATGGCTCTTCACAAGATTGTTAATGGTAAAGAAGCTGAATACAAGGTTGAGGAAGATAATATGTACCACATGGGGGTTCTAAACATGAATGCCAGGAACATTATCTTGAATATGAAAGTTAATGTTTCGGCAAAGGTATATGATACCACCAAAGGCAAGAAGATGTGCTCTACTGCAAATGGATCGTGTAGGCTCAGTTTTGTCTTCCCTAATACTCAGTATGTTATTTTTACGGCACCTGGCAAAGGAGATGGGGGTTCGTATGTTGAAATTTCTTTTCTGGCTCGTGTGTTGACCTACATATTACTTTTAGGAGCTCTTATGATTGTTGTTTATCTGATTCTGAAGTTCCTTGGAGTCTATGATGGTGGTGATCGGAATAGTCGTGTGACTGTCGACGCCACATACAGAACAAGTGATGTAGTGGCAAGGCAAACCGAAACTGAGCCCTTGATGCAAGTGGAGACAAATCGATGGACATATGGAACAAATGCAAAAGATGACGAAGAAGAAGATTCAGGAGCATCCAGTAGCTCTTCAGAGGAGTTATATGATGAAAAATTATGTTGCATTTGTTACGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGGCATTGTGCCACTTGCTATGACTGTGCAGAGAGGATTGTAGATGGGGAGAGCAAAGTGTGCCCTATATGCCGAAGGCTTATTCACAAAGTACGACGATTATATCATAATTAG 1215 0.4247 MALLHRVMHTITIPSMYQHQRWQHAWMLPPLTIWICVSITLRYGYYGDSCILLGPASSRLMKTSSVFVKQLQVSNKDNNQVILHAFNEKPELSSQTNWTVSNLCLVEAYKSKGISLWLNQGSTIRMGWEAHTTSSLDQLHGMVIKGEKKFKLPQAKQTSFPNAMALHKIVNGKEAEYKVEEDNMYHMGVLNMNARNIILNMKVNVSAKVYDTTKGKKMCSTANGSCRLSFVFPNTQYVIFTAPGKGDGGSYVEISFLARVLTYILLLGALMIVVYLILKFLGVYDGGDRNSRVTVDATYRTSDVVARQTETEPLMQVETNRWTYGTNAKDDEEEDSGASSSSSEELYDEKLCCICYDEQRNSFFVPCGHCATCYDCAERIVDGESKVCPICRRLIHKVRRLYHN* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0356 404 ProSiteProfiles Zinc finger RING-type profile. 352 392 IPR001841 -
Gso6g0356 404 Pfam Domain of unknown function (DUF4792) 82 150 IPR032008 -
Gso6g0356 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 326 403 IPR013083 -
Gso6g0356 404 Pfam Zinc finger, C3HC4 type (RING finger) 349 398 - -
Gso6g0356 404 SMART ring_2 352 391 IPR001841 -
Gso6g0356 404 PANTHER OS05G0521000 PROTEIN 19 403 IPR044586 GO:0004842
Gso6g0356 404 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 19 403 - -
Gso6g0356 404 Pfam Domain of unknown function (DUF4793) 175 276 IPR032010 -
Gso6g0356 404 SUPERFAMILY RING/U-box 343 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0356 Gso-Chr6 3347284 3350311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0356 335 402 C3H Transcription Factor Family AT1G62370 33.824 4.52e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0356 - - gmx:100794488 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0381 4 3486113 3489077 Gso6g0356 6 3347284 3350311 GST