Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0354 ATGGAGACTCGCGCCGCCGCAAAGAGAAAGGCAAATGCCGCCACCATAGTCTTTGTCGAAAAACAATACCCCAACAAGAGGCAGCGGGTTGTGTTGGGTGAACTTCCCAATTTACAAAACCTTATTGTCTCCGAAACTCAAAATTCGCGCAAAGAGAAGCTCCTATGTCGGAAGAATCCCAATGAGAAGAAACCATCACCCACAAACAACAACACCTTTCCTTCCCCTCAGATCAACGAATCTTATGATTCGGATATCCACGGGTATCTTCGTGAAATGGAGATGCAGAATAAGAGAAGACCAATGGTTGACTACATTGAAAAGGTTCAGAAAATCGTTACCCCAACCATGAGAGCAATATTGGTGGATTGGTTAGTGGAGGTAGCTGTGGAGTACAAGCTTCTATCGGATACTCTTCATCTCTCTGTATCATACATCGATAGGTTTTTATCAGTTAATCCAGTCAGTAAATCCAGACTTCAGTTACTGGGTGTTTCGTCCATGCTCATTGCTGCAAAATATGAGGAGATGGATCCACCTGGTGTGGACGAGTTTTGCAGCATCACTGATCACACTTATGACAAGACAGAGGTTGTGAAGATGGAAGCTGACATACTTAAGTCCCTAAAGTTTGAAATGGGAAATCCTACTGTAAGCACCTTTCTAAGGAGGTATGCTGATGTTGCTTCTAATGACCAAAAAACTCCAAATTTGCAGATTGACTTTTTGGGCAGCTATATTGGCGAGCTAAGTTTGTTGGACTATGATTGTTTAAGATTCTTGCCTTCTATTGTGGCTGCCTCGGTTATATTTCTTGCCAAGTTCATTATCTGTCCTGAAGTGCATCCATGGACTTCTTCCTTGTGTGAATGCTCGGGTTACAAGCCAGCTGAGTTGAAAGAATGTGTCCTTATCTTGCATGACTTGTATTTGTCAAGAAAGGCAGCATCCTTCAAAGCTGTTCGGGCAAAATACAAGCAGCAAAAGTTCGAATGTGTGGCAAACCTGCCTACCCCTCCATATGTACCGAGTTGTTACTTTGAAGACCAGTGGTGCAGTGAATTCCTTGATAAATGA 1077 0.4299 METRAAAKRKANAATIVFVEKQYPNKRQRVVLGELPNLQNLIVSETQNSRKEKLLCRKNPNEKKPSPTNNNTFPSPQINESYDSDIHGYLREMEMQNKRRPMVDYIEKVQKIVTPTMRAILVDWLVEVAVEYKLLSDTLHLSVSYIDRFLSVNPVSKSRLQLLGVSSMLIAAKYEEMDPPGVDEFCSITDHTYDKTEVVKMEADILKSLKFEMGNPTVSTFLRRYADVASNDQKTPNLQIDFLGSYIGELSLLDYDCLRFLPSIVAASVIFLAKFIICPEVHPWTSSLCECSGYKPAELKECVLILHDLYLSRKAASFKAVRAKYKQQKFECVANLPTPPYVPSCYFEDQWCSEFLDK* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0354 358 Gene3D - 85 335 - -
Gso6g0354 358 SUPERFAMILY Cyclin-like 75 213 IPR036915 -
Gso6g0354 358 Pfam Cyclin, C-terminal domain 216 338 IPR004367 -
Gso6g0354 358 SMART Cyclin_C_2 216 339 IPR004367 -
Gso6g0354 358 PANTHER CYCLINS 22 350 IPR039361 -
Gso6g0354 358 MobiDBLite consensus disorder prediction 62 80 - -
Gso6g0354 358 CDD CYCLIN 117 206 IPR013763 -
Gso6g0354 358 PIRSF Cyclin_A_B_D_E 2 344 IPR039361 -
Gso6g0354 358 PANTHER CYCLIN-A3-1-RELATED 22 350 - -
Gso6g0354 358 SUPERFAMILY Cyclin-like 216 341 IPR036915 -
Gso6g0354 358 Gene3D - 99 214 - -
Gso6g0354 358 ProSitePatterns Cyclins signature. 118 149 IPR006671 -
Gso6g0354 358 CDD CYCLIN 216 307 IPR013763 -
Gso6g0354 358 MobiDBLite consensus disorder prediction 49 80 - -
Gso6g0354 358 SMART cyclin_7 220 308 IPR013763 -
Gso6g0354 358 SMART cyclin_7 123 207 IPR013763 -
Gso6g0354 358 Pfam Cyclin, N-terminal domain 85 213 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0354 Gso-Chr6 3336472 3338663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0354 3 349 Core Cell Cycle Gene Families AT1G47230 52.646 6.09e-130 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0354 K06627 - gmx:100793436 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0379 4 3470439 3473092 Gso6g0354 6 3336472 3338663 GST