Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0349 ATGGCTGCAGTATATACCTTGTTGTTGATCCTTCTGATCTCTCTTGTTATTTCATCTTCAGCAGTGGACACCATGCATCAAGGTTCATCACTCTCGGTGGAGGAACCAAAAGATTTCATGCTCTCTCCAAACGGCATGTTCTCTTCTGGTTTCTTTGCCGTTGGCGAAAACGCATATTCCTTCGCCGTTTGGTATTCCGAACCCTATGGCCAAACACGAAACGCAACCGTCGTATGGATGGCGAACCGTGACCAGCCCGTGAACGGCAAGGGCTCAAAGTTTTCGCTTCTTCACAACGGCAACCTCGCCTTAAACGACGCTGACGAGTCCCACGTTTGGTCCACAAACACCGTTTCACTGTCCTCCTCCGTGCTTCTGTTCCTCGACAACACCGGCAACCTCGTTCTCCGCCAAACGGAGAGTACCGGTGTCGTTTTGTGGCAAAGCTTTGATTTCCCTACAGATACGCTTTTACCTCAACAAGTGTTCACGAGACACGCGAAACTGGTCTCTTCTAGAAGCAAGACAAACAAGTCCTCGGGTTTCTACACTTTGTTCTTCGACAACGACAACATTCTTCGTCTTCTTTACGATGGTCCTGAAGTTTCTGGCCTTTACTGGCCAGATCCATGGCTGGCATCTTGGAACGCTGGAAGATCCACTTACAACAACAGCAGAGTTGCGGTGATGGACACGCTCGGCAATTTTAGTTCTTCAGATGATTTACATTTTTTGACATCTGATTACGGCAAAGTCGTCCAAAGAAGATTGACCATGGATAACGATGGAAACATTCGTGTTTATAGCCGGAGACACGGTGGAGAGAAATGGTCTATTACGTGGCAAGCCAAAGCAAGACCGTGTAACATTCATGGTATTTGTGGCCCAAATAGTTTGTGCTCTTATCATCAAAATTCTGGTATAGAATGCTCTTGTCTTCCCGGGTATAAGTGGAAGAACGTAGCCGATTGGTCTTCTGGGTGTGAACCGAAATTCTCTATGCTTTGCAACAAAACCGTGTCTCGATTTTTATATATAAGCAACGTGGAGTTGTATGGCTATGACTATGCGATCATGACCAATTTCACGCTCAATCAGTGTCAGGAGTTATGCCTTCAATTGTGCAATTGTAAAGGCATCCAATACACCTATGTCTTTGAAAGTGGCACTTATACATGTTACCCGAAGTTGCAGTTGCGGAATGCGTACCGTACACCGTATTTTAATGCTGATTTGTACTTGAAACTCCCGGCAAACAGTTCATATTCTTATGAGGGGTCCACAGAACAGCACGGTCTTGATTGCTCTTCTTCGAGAACGATACAGCTTGAGAGAGCCTATGACATGGGTCATGAAAGCAGATATATTAAGTTCTTATTTTGGTTTGTAGGGGGAGTTGGGGGAATTGAAGTTTTTTGCATATTTGTGATTTGTCTTTTTCTGGTGAAAACAAGTGGCCAAAAATATTCCGGTGTAGATGGACGAGTCTATAATCTATCCATGAATGGTTTCAGGAAATTCAGTTATTCTGAGCTGAAACAAGCCACCAAAGGTTTTAGGCAAGAGATAGGAAGGGGTGCAGGAGGGGTTGTTTACAAAGGAGTGTTGCTGGATCAACGCGTTGTAGCAGTGAAGAGACTCAAGGATGCTAATCAAGGAGAAGAAGAGTTCCTCGCGGAAGTAAGCAGCATTGGAAGACTTAACCACATGAACTTGATTGAGATGTGGGGATATTGTGCTGAGAGAAAACACAGGCTATTGGTGTATGAGTACATGGAGAATGGATCTCTAGCACAAAATATCAAGTCCAATGCTTTGGATTGGACCAAAAGGTTTGACATAGCCTTAGGTACTGCAAGAGGTCTAGCTTATATTCATGAGGAGTGTTTGGAGTGTATTCTGCACTGCGATGTAAAGCCACAAAACATACTTCTAGATTCTAACTATCATCCGAAGGTGGCGGATTTTGGGATGTCCAAGCTGATCATGAGAAACAGAAATGATACTAGTACATACTCTAATATTTCAAGGATACGAGGAACAAGAGGTTACGTGGCTCCTGAGTGGGTTTTTAATCTATCAATCACGTCCAAAGTTGATGTCTACAGCTATGGAATGGTTGTTTTGGAAATGGTCACTGGAAAAAGCGTAACAAAGGATGTTGATGCCACTGATAATGGAGTGGAAAACCTGCATCTCAGCATGGTCGCATGGCTTAAAGAGAAAGACAAAAATGGATCTGGGTGCGTTAGTGAAATCTTGGACCCAACAGTAGAAGGAGGTTATGACGAGGGTAAGATGAAAGCTTTGGCTAGAGTGGCCCTGCAGTGCGTAAAGGAAGAGAAGGACAAGAGACCCACCATGAGTCAAGTAGTAGAGATACTTCAGAAATCTAGCCGCGAAAATGATCATCAGTGA 2418 0.4417 MAAVYTLLLILLISLVISSSAVDTMHQGSSLSVEEPKDFMLSPNGMFSSGFFAVGENAYSFAVWYSEPYGQTRNATVVWMANRDQPVNGKGSKFSLLHNGNLALNDADESHVWSTNTVSLSSSVLLFLDNTGNLVLRQTESTGVVLWQSFDFPTDTLLPQQVFTRHAKLVSSRSKTNKSSGFYTLFFDNDNILRLLYDGPEVSGLYWPDPWLASWNAGRSTYNNSRVAVMDTLGNFSSSDDLHFLTSDYGKVVQRRLTMDNDGNIRVYSRRHGGEKWSITWQAKARPCNIHGICGPNSLCSYHQNSGIECSCLPGYKWKNVADWSSGCEPKFSMLCNKTVSRFLYISNVELYGYDYAIMTNFTLNQCQELCLQLCNCKGIQYTYVFESGTYTCYPKLQLRNAYRTPYFNADLYLKLPANSSYSYEGSTEQHGLDCSSSRTIQLERAYDMGHESRYIKFLFWFVGGVGGIEVFCIFVICLFLVKTSGQKYSGVDGRVYNLSMNGFRKFSYSELKQATKGFRQEIGRGAGGVVYKGVLLDQRVVAVKRLKDANQGEEEFLAEVSSIGRLNHMNLIEMWGYCAERKHRLLVYEYMENGSLAQNIKSNALDWTKRFDIALGTARGLAYIHEECLECILHCDVKPQNILLDSNYHPKVADFGMSKLIMRNRNDTSTYSNISRIRGTRGYVAPEWVFNLSITSKVDVYSYGMVVLEMVTGKSVTKDVDATDNGVENLHLSMVAWLKEKDKNGSGCVSEILDPTVEGGYDEGKMKALARVALQCVKEEKDKRPTMSQVVEILQKSSRENDHQ* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0349 805 CDD PAN_AP_plant 332 417 - -
Gso6g0349 805 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 800 - -
Gso6g0349 805 Pfam D-mannose binding lectin 76 168 IPR001480 -
Gso6g0349 805 Pfam S-locus glycoprotein domain 245 319 IPR000858 GO:0048544
Gso6g0349 805 Gene3D Phosphorylase Kinase; domain 1 486 591 - -
Gso6g0349 805 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 6 800 - -
Gso6g0349 805 ProSitePatterns Protein kinases ATP-binding region signature. 523 545 IPR017441 GO:0005524
Gso6g0349 805 Gene3D - 16 151 IPR036426 -
Gso6g0349 805 SUPERFAMILY Protein kinase-like (PK-like) 497 795 IPR011009 -
Gso6g0349 805 ProSiteProfiles Protein kinase domain profile. 517 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0349 805 ProSiteProfiles PAN/Apple domain profile. 336 417 IPR003609 -
Gso6g0349 805 CDD STKc_IRAK 523 797 - -
Gso6g0349 805 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 208 IPR036426 -
Gso6g0349 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Gso6g0349 805 CDD B_lectin 41 153 IPR001480 -
Gso6g0349 805 Gene3D - 153 279 IPR036426 -
Gso6g0349 805 SMART ntp_6 338 416 IPR003609 -
Gso6g0349 805 SMART serkin_6 517 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0349 805 SMART blect_4 28 153 IPR001480 -
Gso6g0349 805 PIRSF SRK 1 805 IPR024171 GO:0004674
Gso6g0349 805 Pfam Protein kinase domain 521 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0349 805 Gene3D Transferase(Phosphotransferase) domain 1 592 805 - -
Gso6g0349 805 ProSiteProfiles Bulb-type lectin domain profile. 22 149 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0349 Gso-Chr6 3290237 3292714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0349 495 795 Receptor kinase-like Gene Family AT3G58690 40.190 1.99e-65 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso6g0349 Pkinase 7.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0349 - - gmx:100792388 1579.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0370 4 3396152 3398783 Gso6g0349 6 3290237 3292714 GST