Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0343 ATGAATTCCTACTTTCCTTGTATCGTAGCGTATGCAATGGACAAATCCACATTTGGCAGTGTGATCCCAACACACGAAAATCACTTGAGTTCTGAGGTTGGTCCAAGAATGGCGATTGATCCACACTTATTACTGTTCCTGCTTCTGGCCCCGTCAAACGCACATTGCTCCAAACTCCAACGCCGTCATCTTCCTCCCTTTGTTTTCACCGACGCAACCGCCCTCCTCGTCTTCAAACTAAAAGCCGACGTTAACAACCACCTTGACTTCTCCCCCCTCACGCGCGGCCTCCGCTTCTGCGCGTGGCATGGCGTGGAATGCAACGGCCCCAAAGTGCTGCGTCTCGTTCTCCAAAACTTAGATCTCGGAGGCGCGTGGGCTCCCAAAACACTCACGCGTCTCGACCAGCTCCGAGTCCTCAGCTTGCAGAACAACTCACTCACCGGACCCATTCCAGACCTCACCGGCCTCTTCAATCTCAAAAGTCTCTTCCTTGATAACAACCACTTCACCGCCTCTCTCCCTCCCTCACTCTTCTCTCTCCACCGTCTCCGAAACTTGGATTTCTCTCACAACAACTTCTCCGGACCTATTCCCGCCGCCTTCACCACCCTAGACCGCCTCCACAGCCTCCTTTTAAGCTTCAACTCCTTCAACGGTTCAATCCCCCCGTTTAACCAATCCTCTCTCAAAATCTTCCGAGCCTCCGCCAACAACCTCTCCGGCGCGGTTCCCGTGACGCCGACGGTCTTCCGTTTTCCGCCTTCTTCCTTCGCGTTAAACCCTCAACTCTGCGGCGAAATCATCCGCGTACAATGCCGTCCCGCACAGCCTTTCTTCGGACCCGTGGCGCCGCCTACGGCTGCGCTCGGCCAGAACGCGCAGGTTCACGGCGTCAACGGAATTATCCGGCAGCCGTACGAGAAGAAGCGCCACGACCGGAGGGCGCTGATTATTGGGTTCTCGGCCGGGATATTCGTTCTGGTTTGCTCGCTGGCGTGCTTGGCGGCGGCGGTGAGGAAGCAGAGGAGTCGGAGCAAGAAGGACGAGAGGACGGGGATGATGGCGGCTGATGCGGCGGCGAGGGAGGAGGCCGCGGCGGTTATGCGGATGGAGATGGAGGAGAAAGTAAAGAGAGCGGAGGTGGCGAAGAGTGGGGGTGAGGCGCAGGTGTACACGCTGGAGCAGCTGATGAAAGGTTCAGCGGAGCTATTAGGGAGAGGGTGTTTGGGAAGCACTTATAAGGCGGTTCTTGATAACCCTTTGATGGGCTTGGCATGCAGTTCGAGATCAAGCAGGGCAAGGCCATTGCATTGGACATCATGCTTAAAAATAGCAGAGGACGTAGCACAAGGTCTGGCCTTCATCCACCAGGCATTGAGATTGGTCCATGGCAATCTCAAGTCCTCCAATGTTCTTCTTGGACCGGATTTTGAGGCATGCATTACTGATTACTGCCTTTCTGTGTTGACTCACCCATCCATATTCGACGAAGATGGGGACTCAGCAGCATACAGAGCTCCAGAAACTCGCAACCCCAATCATCACCCAACCCACAAATCCGATGTTTATGCGTATGGGATTTTGTTGCTTGAGCTTCTGACTGGGAAATTTCCCTCCGAGCTCCCATTCATGGTTCCTGGTGACATGTCAAGTTGGGTGAGGTCCATCAGGGATGACAATGAGAACGAAGATAACCGAATGTACATGCTTCTTCAGGTGGCTACAACTTGTAGCTTGACCTCACCTGAGCAGAGGCCAACTATGTGGCAGGTCTTGAAGATGTTGCAGGAAATCAAAGAGATTGTACTGTTGGAGGATAGTAGTCAATTAGACCTACGCAGTAGTAATGCCATACCTTAA 1863 0.5362 MNSYFPCIVAYAMDKSTFGSVIPTHENHLSSEVGPRMAIDPHLLLFLLLAPSNAHCSKLQRRHLPPFVFTDATALLVFKLKADVNNHLDFSPLTRGLRFCAWHGVECNGPKVLRLVLQNLDLGGAWAPKTLTRLDQLRVLSLQNNSLTGPIPDLTGLFNLKSLFLDNNHFTASLPPSLFSLHRLRNLDFSHNNFSGPIPAAFTTLDRLHSLLLSFNSFNGSIPPFNQSSLKIFRASANNLSGAVPVTPTVFRFPPSSFALNPQLCGEIIRVQCRPAQPFFGPVAPPTAALGQNAQVHGVNGIIRQPYEKKRHDRRALIIGFSAGIFVLVCSLACLAAAVRKQRSRSKKDERTGMMAADAAAREEAAAVMRMEMEEKVKRAEVAKSGGEAQVYTLEQLMKGSAELLGRGCLGSTYKAVLDNPLMGLACSSRSSRARPLHWTSCLKIAEDVAQGLAFIHQALRLVHGNLKSSNVLLGPDFEACITDYCLSVLTHPSIFDEDGDSAAYRAPETRNPNHHPTHKSDVYAYGILLLELLTGKFPSELPFMVPGDMSSWVRSIRDDNENEDNRMYMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLEDSSQLDLRSSNAIP* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0343 620 SUPERFAMILY Protein kinase-like (PK-like) 434 600 IPR011009 -
Gso6g0343 620 Gene3D Ribonuclease Inhibitor 69 259 IPR032675 -
Gso6g0343 620 ProSiteProfiles Protein kinase domain profile. 315 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0343 620 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 44 423 - -
Gso6g0343 620 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 422 608 - -
Gso6g0343 620 Pfam Leucine rich repeat 159 217 IPR001611 GO:0005515
Gso6g0343 620 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 422 608 - -
Gso6g0343 620 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 44 423 - -
Gso6g0343 620 ProSiteProfiles Leucine-rich repeat profile. 136 158 IPR001611 GO:0005515
Gso6g0343 620 Pfam Protein tyrosine and serine/threonine kinase 433 596 IPR001245 GO:0004672|GO:0006468
Gso6g0343 620 Gene3D Transferase(Phosphotransferase) domain 1 425 612 - -
Gso6g0343 620 SUPERFAMILY L domain-like 69 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0343 Gso-Chr6 3219778 3222940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0343 63 610 Receptor kinase-like Gene Family AT3G50230 41.074 6.80e-140 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso6g0343 PK_Tyr_Ser-Thr 1.5e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0343 - - gsj:114414131 1169.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0362 4 3298409 3301978 Gso6g0343 6 3219778 3222940 GST