Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0340 ATGGAAGAAGCGGGTTTAGGAGATTGTTGTTCCTCTAATACGACTATTACGAGGAAAAGCGAGAAGCGAAAGCAGCAGCACCAACAACAAGAGAAGCCATACAGAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCGGAGATTAGAGAACCCAACAAGAGGTCGAGGATCTGGTTGGGTTCTTACGCCACCCCCGTCGCCGCCGCACGCGCCTACGACACCGCCGTCTTCCACCTCCGAGGCCCTTCCGCTCGCCTTAACTTCCCCGAATTGCTGTCCCAGGACGACGACGTTTCGACCCAACAACAGGGCAAGATGTCCGCCGATTCAATTCGCAAAAAAGCGACCCAAGTCGGCGCCAGAGTCGACGCGCTCCAAACCGCGCTTCAGCAATCCTCGTCGACACACTCCATTAGTTCCAGCCACGTCAGCTATGAGAAACCAGACTTGAACGAGTATCCCAAACCTGAAGATTAG 480 0.5458 MEEAGLGDCCSSNTTITRKSEKRKQQHQQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYATPVAAARAYDTAVFHLRGPSARLNFPELLSQDDDVSTQQQGKMSADSIRKKATQVGARVDALQTALQQSSSTHSISSSHVSYEKPDLNEYPKPED* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0340 159 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 159 - -
Gso6g0340 159 MobiDBLite consensus disorder prediction 1 35 - -
Gso6g0340 159 MobiDBLite consensus disorder prediction 127 147 - -
Gso6g0340 159 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Gso6g0340 159 PRINTS Ethylene responsive element binding protein signature 72 92 IPR001471 GO:0003700|GO:0006355
Gso6g0340 159 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Gso6g0340 159 MobiDBLite consensus disorder prediction 96 115 - -
Gso6g0340 159 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Gso6g0340 159 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Gso6g0340 159 MobiDBLite consensus disorder prediction 17 35 - -
Gso6g0340 159 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Gso6g0340 159 MobiDBLite consensus disorder prediction 96 111 - -
Gso6g0340 159 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Gso6g0340 159 MobiDBLite consensus disorder prediction 127 159 - -
Gso6g0340 159 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 159 - -
Gso6g0340 159 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0340 Gso-Chr6 3172744 3174202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0340 32 159 AP2-EREBP Transcription Factor Family AT2G23340 58.993 6.24e-51 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso6g0340 AP2 2.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0340 K09286 - gmx:732579 298.901