Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0339 ATGGGCAGCATGAAGGTGCATCAGTTCACACGTGGATTCTGCTGGGAGCACGAACCTTTCCTCACACTTGGCTGCAAGAGATTACGCCCTCTTGCTCCCAAGCTTCCCAACACCCAAACTAATACTATCCCTACCACCCCTTCTGTTCCTTTCGATCTCAAGAGCTTCATCAGGCCTGAAAGTGGCCCCAGAAAACCCGTTTCCTCTGACGACAGTAAGAAGGATCCACCTTCACCCCAAGGCCAGGTTGAAACGCATCCAGGAGGAACACGGTGGAATCCTACTCAAGAACAGATAGGCATATTGGAGATGTTGTACAAAGGAGGGATACGAACTCCAAATGCTCAACAGATAGAGCAGATCACTGTCCAGCTTGGAAAGTACGGTAAGATCGAAGGGAAAAACGTGTTCTATTGGTTTCAGAACCACAAAGCACGCGAGAGACAAAAGCAGAAGCGCAACAGCCTTGCCTTTTCTCATAGTCCTCGAACTCACACAATTCATAGTATTGTTACTTTGGAGACAACAAGGGGGGAAGTAGTAGAGAGAGATCACGAGGAAGATAGTCCGTACAAGAAGAAGTGTAGGAGATGGGTATTTGAGTGCTTGGAAGAACAAAACATGTCATCAGCGTGTGAGCAAGAGGAACATAGAACTCTGGAGCTTTTCCCATTGCACCCGGAAGGCAGATGA 693 0.4791 MGSMKVHQFTRGFCWEHEPFLTLGCKRLRPLAPKLPNTQTNTIPTTPSVPFDLKSFIRPESGPRKPVSSDDSKKDPPSPQGQVETHPGGTRWNPTQEQIGILEMLYKGGIRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLAFSHSPRTHTIHSIVTLETTRGEVVERDHEEDSPYKKKCRRWVFECLEEQNMSSACEQEEHRTLELFPLHPEGR* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0339 230 CDD homeodomain 90 151 IPR001356 GO:0003677
Gso6g0339 230 MobiDBLite consensus disorder prediction 34 49 - -
Gso6g0339 230 ProSiteProfiles 'Homeobox' domain profile. 85 150 IPR001356 GO:0003677
Gso6g0339 230 MobiDBLite consensus disorder prediction 34 94 - -
Gso6g0339 230 Pfam Homeodomain 90 149 IPR001356 GO:0003677
Gso6g0339 230 MobiDBLite consensus disorder prediction 73 94 - -
Gso6g0339 230 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 230 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Gso6g0339 230 Gene3D - 90 155 - -
Gso6g0339 230 SUPERFAMILY Homeodomain-like 86 157 IPR009057 -
Gso6g0339 230 SMART HOX_1 87 154 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0339 Gso-Chr6 3155553 3157003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0339 4 156 Wox Gene Family AT1G46480 66.049 1.12e-65 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gso6g0339 Homeodomain 4.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0339 - - gmx:100781015 475.322