Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0338 ATGGCGCATATTCCTCAGACCCCCACCAATGACGCGGCGGCTTCTGGTGCAAATCCGTCGATGACGACCATCTCGTTGTACGTCGGGGATCTTGACCACGACGTCAACGATCCGCAGCTCTATGATCTCTTCAACCAGGTTGCCCAAGTCGTTTCCGTTCGAATTTGCAGGGACGTGGCCACCCAACAATCCCTTGGTTACGGCTACGTCAATTTCAGCAACGCTCGAGATGCCGCAAAAGCAATTGATGTGCTGAATTTCACTCCGCTAAATGGCAAAACCATTAGAATAATGTACTCTATTCGGGACCCTAGTGCTCGGAAGAGTGGTGCAGCTAATGTTTTCATAAAGAATTTGGACAAGGCAATCGATCACAAGGCTTTGTTTGATACATTTTCGGCTTTTGGGAATATTCTATCTTGCAAGATTGCGACGGATGCTTCTGGCCAGTCTAAAGGCCATGGTTTTGTGCAGTTTGAGAGTGAAGAATCTGCACAAAATGCAATTGACAAGTTAAATGGCATGCTGATCAATGATAAGCAGGTCTATGTGGGTCCTTTCCAGCGGAAGCAGGATAGAGAGAGTGCTCTCAGTGGCACAAAGTTTAATAACGTTTATGTGAAAAACCTGTTTGAGGCAACGACGGAGGCTGACTTGAAGAGGATTTTTGGAGAATATGGAGCTATTACTAGTGCTGTAGTGATGAGAGATGTAGATGGTAAATCAAAAGGTTTTGGTTTTGTCAATTTTGCGAATGTAGAAGATGCTGCTAAAGCTGTGGAGGCTCTAAATGGAAAGAATTTTGATGGTAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAGTCTGAAAGGGAGCTTGAACTGAAAGAGCGAAATGAGCAGAGTACGAAGGAGACTGTTGATAAATATCATGGTACAAACTTGTATATCAAGAACTTGGATGATAGTGTTGGTGATGAAGAACTCAGGGAACTGTTCTCTGAGTTTGGTACGATAACCTCATGCAAGGTTATGCGAGATCCAAGTGGAATTAGTAGGGGATCTGGATTTGTTGCATTTTCAATTGCTGAGGGAGCAAGTTGGGCTCTTGGTGAGATGAATGGTAAAATGGTTGCTGGCAAACCTCTCTATGTTGCCCTTGCACAGAGAAAAGAAGATAGAAGAGCAAGGTTACAGGCACAATTTTCACAAGCGAGGCCTGTTGCAATAACCCCTAATGTTTCACCTCGAATGCCACTATACCCTCTAGGGGCTCCTGGGATAGGACAACAATTGCTGTATGGGCAAGCAGCTCCAAGCATGATACCTCAAGCTGCATTTGGTTACCAGCAGCATTTTGTTCCTGGAATGAGGCCAGGTGGTGCTCCAAACTTCTATGTTCCACTGGTTCAGCAGGGTCAACAGGGGCAGCGCTCAGGAGGACAACGAGGAGCAGGTCCTATGCAACAGCTCCAGCAGCCACTGCCATTGATGCACCAACAGATGCTTCCAAGGGGACATGTCTACCGATATCCTCCTGGCTCCAATATGCAAAATATTCAACTGGCAGGAGTACCTGGAGGAATGGTCAGTTACGGCATTGGTCAACCAATGCCCACACAGGCCCTGGCCTCGGCCCTTGCCAATGCTACTCCTGAACAGCAGAGGACTATGCTTGGTGAAGCTTTATACCCGTTAGTAGATAAGCTGGAGCATGAAACAGCAGCAAAGGTTACTGGTATGCTTTTAGAGATGGATCAACCCGAGGTATTACATCTGATTGAGTCACCAGATGCTCTTAAGGCAAAAGTTGTTGAGGCCATGGATGTGTTGAGAAAAGTTACACAGCAGCAATCAAACAGCCCAGCCGATCAACTGGCTTCACTCTCTCTGAATGATAATGTCGAGTCTTAG 1893 0.4622 MAHIPQTPTNDAAASGANPSMTTISLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNARDAAKAIDVLNFTPLNGKTIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVYVGPFQRKQDRESALSGTKFNNVYVKNLFEATTEADLKRIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKERNEQSTKETVDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRGSGFVAFSIAEGASWALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQARPVAITPNVSPRMPLYPLGAPGIGQQLLYGQAAPSMIPQAAFGYQQHFVPGMRPGGAPNFYVPLVQQGQQGQRSGGQRGAGPMQQLQQPLPLMHQQMLPRGHVYRYPPGSNMQNIQLAGVPGGMVSYGIGQPMPTQALASALANATPEQQRTMLGEALYPLVDKLEHETAAKVTGMLLEMDQPEVLHLIESPDALKAKVVEAMDVLRKVTQQQSNSPADQLASLSLNDNVES* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0338 630 SMART rrm2_1 204 276 IPR003954 GO:0003676
Gso6g0338 630 SMART rrm2_1 113 185 IPR003954 GO:0003676
Gso6g0338 630 SMART rrm2_1 307 379 IPR003954 GO:0003676
Gso6g0338 630 Gene3D - 188 287 IPR012677 -
Gso6g0338 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 383 IPR000504 GO:0003723
Gso6g0338 630 PANTHER RNA BINDING PROTEIN 16 614 - -
Gso6g0338 630 SMART poly_2 544 607 IPR002004 GO:0003723
Gso6g0338 630 PANTHER POLYADENYLATE-BINDING PROTEIN 16 614 - -
Gso6g0338 630 Gene3D - 288 392 IPR012677 -
Gso6g0338 630 CDD RRM2_I_PABPs 110 186 IPR045305 -
Gso6g0338 630 SMART rrm1_1 204 276 IPR000504 GO:0003723
Gso6g0338 630 SMART rrm1_1 307 379 IPR000504 GO:0003723
Gso6g0338 630 SMART rrm1_1 25 98 IPR000504 GO:0003723
Gso6g0338 630 SMART rrm1_1 113 185 IPR000504 GO:0003723
Gso6g0338 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 273 IPR000504 GO:0003723
Gso6g0338 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 376 IPR000504 GO:0003723
Gso6g0338 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 182 IPR000504 GO:0003723
Gso6g0338 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 96 IPR000504 GO:0003723
Gso6g0338 630 CDD RRM1_I_PABPs 25 104 - -
Gso6g0338 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Gso6g0338 630 Gene3D - 112 185 IPR012677 -
Gso6g0338 630 CDD RRM3_I_PABPs 202 281 - -
Gso6g0338 630 Gene3D - 528 611 - -
Gso6g0338 630 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 25 605 IPR006515 GO:0003723
Gso6g0338 630 CDD RRM4_I_PABPs 305 383 - -
Gso6g0338 630 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 532 609 IPR002004 GO:0003723
Gso6g0338 630 Pfam Poly-adenylate binding protein, unique domain 540 604 IPR002004 GO:0003723
Gso6g0338 630 SUPERFAMILY RNA-binding domain, RBD 203 385 IPR035979 GO:0003676
Gso6g0338 630 Gene3D - 6 111 IPR012677 -
Gso6g0338 630 SUPERFAMILY PABC (PABP) domain 485 621 IPR036053 GO:0003723
Gso6g0338 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Gso6g0338 630 SUPERFAMILY RNA-binding domain, RBD 25 193 IPR035979 GO:0003676
Gso6g0338 630 MobiDBLite consensus disorder prediction 608 630 - -
Gso6g0338 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0338 Gso-Chr6 3141479 3146076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0338 23 628 Eukaryotic Initiation Factors Gene Family AT1G49760 64.537 0.0 782
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0338 K13126 - gmx:100778879 1217.6