Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0330 ATGGAGCAGCAGCACATGGACATGATGACCATGATGATGTTGCAGCACCTCCCTGAATTCTCTGAACCATACACTCACACCATGGAAGGATTTCATCCCCCATCAGAAGAGTTCTGCGGTAACAACAACAACAATATACGCAACACTATGCAACTAGCAGATTTAATTGATAACAATAACCCTCTTAGTCCCATACCTTGGTCCTCCTCATACTCATTCACACACTTGCCAGCATCCACTACCGAAATCTCTTTCTCCAATAATAGCCATCCTACTACCCCAATAATGCTTCAAGAACACGAACAACAATATGAGGGTGCAAATGCAAACCCTTACGGAGGTGAGAAGCGGAACTCGATGGCGGCGATGAGGGAGATGATATTCAGAATGGCGGCGATGCAGCCGATACACATAGACCCGGAGTCGGTGAAGGCGCCGAAGCGGAGGAACGTGAAGATATCGAAGGATCCACAGAGCGTGGCGGCGCGGCACCGCAGAGAAAGGATAAGCGAGAGGATAAGGATACTGCAGAGACTGGTCCCCGGGGGAACTAAGATGGACACTGCTTCCATGTTGGATGAGGCCATTCACTACGTCAAGTTTCTCAAAACGCAGGTTCAGTCACTCGAACGCGCTTCCTCCGCTAACAACAATATCAGGCCACTTAACGCTGCAGGCCAGATAGGCTTCCCTGTTGCTTCCACCCCTTATTTTCCTCTGCCTAGTAAACCTTACCAAGCTCCAAACATGGACAATATGCACGATACATATCATTAA 777 0.4865 MEQQHMDMMTMMMLQHLPEFSEPYTHTMEGFHPPSEEFCGNNNNNIRNTMQLADLIDNNNPLSPIPWSSSYSFTHLPASTTEISFSNNSHPTTPIMLQEHEQQYEGANANPYGGEKRNSMAAMREMIFRMAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERASSANNNIRPLNAAGQIGFPVASTPYFPLPSKPYQAPNMDNMHDTYH* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0330 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Gso6g0330 258 CDD bHLH_AtIND_like 154 210 - -
Gso6g0330 258 Pfam Helix-loop-helix DNA-binding domain 162 202 IPR011598 GO:0046983
Gso6g0330 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 212 IPR036638 GO:0046983
Gso6g0330 258 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 3 255 - -
Gso6g0330 258 SMART finulus 159 208 IPR011598 GO:0046983
Gso6g0330 258 Gene3D - 152 222 IPR036638 GO:0046983
Gso6g0330 258 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 3 255 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0330 Gso-Chr6 3059765 3061021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0330 113 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 77.119 8.88e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso6g0330 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0330 - - gmx:100788158 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0348 4 3116646 3117927 Gso6g0330 6 3059765 3061021 GST