Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0328 ATGAATTTCAAGAGCTTTGGAAACGAGACCGGCGGCGGCGGAGGGAGGCCGTCGGGGAACTTCTCCCTGACGCGGCAGCCGTCGGTGTACTCACTGACGTTCGACGAGTTCATGAACAGCATGGGAGGTTCGGGGAAGGATTTTGGGTCCATGAACATGGACGAGTTGCTGAAGAACATTTGGACCGCGGAGGAGGTTCAGACAATGGCGTCGGCGGGAGTCGCCGCCGACGATGGCGGTGCCGGCGCTAGTCATTTGCAGCGGCAGGGGTCGCTGACGCTGCCGCGGACCCTAAGCCAGAAGACCGTGGATGAGGTTTGGAAGGACATTTCGAAGGAATACGGTGGCCTCGGTGGGCCCAACTTGGCGGCCCAGACGCAGAGGCAGCCAACGCTGAGAGAGATGACGTTGGAGGAGTTTTTGGTCAGAGCTGGTGTTGTTAGAGAAGATGTCAAACCGAACGACGGCGTTTTCGTAGATCTGTCTCGCGTTGGGAATAATAATAGTGATTTGGGATTGGGGTTTCAGCAGATGAACAAGGTTGCTGCTGCTGCTGCTACCGGTTTGATGGGTAACCGGTTGAACAATGATCCGCTTGTGGGTCTTCAGTCTTCTGCTAACTTGCCTTTGAATGTTAATGGGGTGGGAGCATCGAATCAGCAGCCACAGATGCAGAGTCCACAGCATCAGCATCAACAGCAGCATCAGCATCAGCAACTACATCAACAACAGCAGCAGCCGCAGATATTTCCTAAGCAGAGTACTATGACTTATGCAGCTGCTCAGATGCCTCAGGGAATGGTGAGGGGTGGGGTTGTGGGGCTTGGTGGTGGTGACCAGAGTTTGAGTGTGCAAGGTGGAGGGATTGGTGGTATGGTTGGTTTGGCACCTGGTTCTGTTCATGTAGCTACTGGCTCTCCTGCTGCTAACCAGCTGTCCTCCGGTGATAGGATTGGGAAGAGCAATGGTGATACCTCGTCCGTGTCCCCGGTTCCTTATGTCTTTAATGGTGGTCTGCGAGGGAGGAAGAGCGGGGGAGCTGTCGAGAAGGTGATTGAGAGGAGGCAGAGAAGGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGGCTTATACCATGGAATTAGAAGCAGAAGTTGCAAAGTTAAAAGAGGAGAACGAAGAACTTCAGAAAAAACAGGCAGAAATTATGGAAATTCAGAAAAATCAAGTTAAGGAAATGATGAATTTGCAACGAGAAGTGAAGAGAAGACGCCTAAGACGAACACAAACTGGTCCATGGTAG 1299 0.525 MNFKSFGNETGGGGGRPSGNFSLTRQPSVYSLTFDEFMNSMGGSGKDFGSMNMDELLKNIWTAEEVQTMASAGVAADDGGAGASHLQRQGSLTLPRTLSQKTVDEVWKDISKEYGGLGGPNLAAQTQRQPTLREMTLEEFLVRAGVVREDVKPNDGVFVDLSRVGNNNSDLGLGFQQMNKVAAAAATGLMGNRLNNDPLVGLQSSANLPLNVNGVGASNQQPQMQSPQHQHQQQHQHQQLHQQQQQPQIFPKQSTMTYAAAQMPQGMVRGGVVGLGGGDQSLSVQGGGIGGMVGLAPGSVHVATGSPAANQLSSGDRIGKSNGDTSSVSPVPYVFNGGLRGRKSGGAVEKVIERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELQKKQAEIMEIQKNQVKEMMNLQREVKRRRLRRTQTGPW* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0328 432 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 357 372 IPR004827 GO:0003700|GO:0006355
Gso6g0328 432 SUPERFAMILY beta-sandwich domain of Sec23/24 203 267 - -
Gso6g0328 432 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 352 403 IPR004827 GO:0003700|GO:0006355
Gso6g0328 432 Pfam bZIP transcription factor 354 404 IPR004827 GO:0003700|GO:0006355
Gso6g0328 432 MobiDBLite consensus disorder prediction 211 250 - -
Gso6g0328 432 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 12 432 - -
Gso6g0328 432 Coils Coil 370 422 - -
Gso6g0328 432 MobiDBLite consensus disorder prediction 1 23 - -
Gso6g0328 432 Gene3D - 352 408 - -
Gso6g0328 432 SMART brlzneu 350 415 IPR004827 GO:0003700|GO:0006355
Gso6g0328 432 SUPERFAMILY Leucine zipper domain 354 401 IPR046347 GO:0003700|GO:0006355
Gso6g0328 432 CDD bZIP_plant_BZIP46 354 408 - -
Gso6g0328 432 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 12 432 IPR043452 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0328 Gso-Chr6 3035416 3040539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0328 8 432 bZIP Transcription Factor Family AT1G49720 44.084 2.70e-88 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso6g0328 bZIP_1 1e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0328 K14432 - gmx:100101876 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0346 4 3097712 3102528 Gso6g0328 6 3035416 3040539 GST