Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0316 ATGGTGGCAGCAATAGCATACGAGGAGAGTCGCCGCAAGAGAGTGGAGGAGAACAAGAAGAGGATGGAAGCCCTCAATCTTCCCCTCCTCTCTCAAGCTCTTCAGAAATCATCCCCTTCTCCCAAATCTTCACCGCTGAAGCAGGTAAAACATCGCGCCATTCAGAAAGAGGTGGTTGTCGTCAGAAGGTCAAGTCGTGTGGCAAACTTGCCATCTCCTGTTTACAAAGAAATAGTTATTGATCGCGTGACAATGCCTAGAAGAAGCCTTTGTAGGAGTTATGATAAGTACAGGGATTATGCGAATCGGGTCTATGCCTCAGATGAGGCCAGAGAGGAAGCATTGGAGAAAGCAGAAAAGTTAATGTCCGGTTTAGAATCAGAATATCCAGCCTTCATAAAGTCAATGCTCCAGTCCCACGTGAGCGGCGGATTCTGGCTGGGCCTTCCAGTCCACTTCTGCAAGAGCAATCTTCCAAAAAAGGACGAAGTGGTGACTTTGATTGATGAGGATGGGACTGAGTATTCGACAATATATTTGGCAGGAAAAACAGGACTTAGTGGTGGATGGAGAGGTTTTGCGATTGCTCATGACTTAGCTGATGGGGATGCTTTAATTTTTCAATTAATTAAGCGCACCACATTCAAGGTTTACATTGTTAGAGCAATTTGTCCTCCGGATGATAAACAGCTCGAGTGA 699 0.4578 MVAAIAYEESRRKRVEENKKRMEALNLPLLSQALQKSSPSPKSSPLKQVKHRAIQKEVVVVRRSSRVANLPSPVYKEIVIDRVTMPRRSLCRSYDKYRDYANRVYASDEAREEALEKAEKLMSGLESEYPAFIKSMLQSHVSGGFWLGLPVHFCKSNLPKKDEVVTLIDEDGTEYSTIYLAGKTGLSGGWRGFAIAHDLADGDALIFQLIKRTTFKVYIVRAICPPDDKQLE* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0316 232 PANTHER B3 DOMAIN-CONTAINING PROTEIN 2 222 - -
Gso6g0316 232 SMART B3_2 132 223 IPR003340 GO:0003677
Gso6g0316 232 SUPERFAMILY DNA-binding pseudobarrel domain 126 221 IPR015300 -
Gso6g0316 232 Coils Coil 5 25 - -
Gso6g0316 232 Gene3D - 106 223 IPR015300 -
Gso6g0316 232 ProSiteProfiles B3 DNA-binding domain profile. 132 223 IPR003340 GO:0003677
Gso6g0316 232 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 222 IPR044837 -
Gso6g0316 232 Pfam B3 DNA binding domain 132 221 IPR003340 GO:0003677
Gso6g0316 232 CDD B3_DNA 130 221 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0316 Gso-Chr6 2937293 2941469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0316 3 221 B3 DNA Binding Superfamily AT3G19184 54.955 6.78e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso6g0316 B3 6e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0316 - - gmx:100794327 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0332 4 2995784 2999788 Gso6g0316 6 2937293 2941469 GST