Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0297 ATGAGTTCAGAAATTGTAACAAAGCCTCTCATATGGCCCTTAACGTGTCCCTCTCTACCTCTCAATATAACCCTTTCTAACTCATTTTTCTCCCATCTCTTCTATAAGAGCCTTGGGGCTTTCCAAGGTAGCACATCTCACAAAATGGCCACGAGTTACTTTCTATTGCTCTCATTATTCCTCCTTTCATCATCTGTCTCTCATGCACTTTCCAATGTTGAAGCTTCTTTCATTGTTCGTCGCCAATTATTGCACTTACACGAGAATGATGAATTATCTGACAACTATGCAGACAATTATGAAACAAATCTAACTTTCCCCAACCCCAGACTAAAAAGTGCATACATTGCTCTTGAGGCATTGAAAAAAGCAATCTACTCAGACCCATCAAATTTCACAGCAAATTGGGAGGGCCCAAATGTTTGCTCTTATAACGGAGTTTTTTGTGAAAAGGCCTTAGATGATCCAAAGATCGATGTTGTAGCTGGGATTGACCTTAACCATGCAGACATCGCAGGTTACATTCCCCCCGAGATCGGTTTGTTAACCGACCTTGCGCTTTTCCATATAAACTCAAACAGGTTTTGTGGGGTTCTCCCAAAAAGTTTTTCCAAGCTTAAGCTTCTTTATGAGCTAGACATCAGCAACAACCGCTTTGTTGGGCGATTCCCTGAGCCTGTGCTTTTAATTCCAGACATTAAATTCCTTGACCTCAGGTTCAATGAGTTTGAAGGGGAATTACCTTCTGAGCTTTTCAACAAAAGCCTTGACGCTATCTTTTTGAACAATAACCGTTTCACGTCCACAATTCCTCAGAACATGGGATCTTCTCCAGCTTCAGTTATGGTTTTTGCCTATAACAATCTCACAGGTTGTCTGCCTTCAAGTATTGGCAACATGACAAAGACATTGAACGAGTTTGTTTTGATCAACAACAACCTCACTGGTTGCTTGCCTGTAGAGATTGGAAAGCTCGAACAAGTTTATGTGTTTGACATAAGCCAAAACAACTTTGTTGGCATGTTACCAAGGACATTTGATGGGCTTAAGAACGCGGAGCACTTATCCATTGGACACAACAAGCTCACGGGTTTTGTCCCACGTAATGTTTGCAGCTTGCCTAATTTGGTCAACTTCACATTCTCTTATAACTATTTCAACGGTGAGGAAGAAGGTTGTGTGCCTCCTAAGAAAGATGTTGTGTTGGATGATGAGAACAATTGCATACCAAATAGGCCAAAACAAAAGGTTGCAGACGTTTGCAATGTGGTGATAAGCAAGCATGTGGATTGTAAATGTGGAAGTGGAAACCCATCTCATTCTTCCAATCCTCCAACAACACCATCTAGCCCATCACCAAAATCTCCATCTGAATCACAACCTTCCAGTCCTCCTAAAGTTGAGACACCAAAGCCACAACCTCAACCTACCCCTTCAACACCAAAGCCACAACCCAGCCCAACCCCTTCTACCCCAAAGACACAAGAACCCAGCCCCACCTCTTCTACCCCCAATCCTCCAACCCCTAAGCCACAAGAACCCAAACCTACCCCTTCTCCCTCAAATCCTCCAACACCAAAGCCACAACCACCCAAAGCAACCCCTTCTCCCTCAAATCCTCCAACACCACAGCCACAACCACCCAAAGCAACCCCTTCTCCCTCAAATCCTCCAACACCAAAGCCACAACCACCCAAAGCAACTCCTTCTCCCTCTAATCCTTCAACACCACAAGCACCCAAAGTAGCACCACCACCAGAGGAAGATCCCCATAGGGAAGCACCTCGACAACGACAAAGACCTTCAGAATCTCCTCCACCACTTGTTCAGTCTCCTCCTCCACCAGTTCACTCCCCACCACCACATGTTCCTTCTCCACCACCCCCAATAGTACATTCCCCTCCCCCACCAATTCACTCTCCTCCACCACCTGTCCATTCTCCTCCACCACCTGTCCACTCTCCACCACCTCCTGTCCATTCTCCTCCACCTCCCGTCCACTCTCCACCACCTCCCGTCCATTCTCCTCCACCTCCTGTTCACTCTCCACCACCTCCCGTCCATTCTCCTCCACCTCCTGTTCACTCTCCTCCACCACTGGTCCATTCTCCTCCACCACCTGTCCACTCTCCACCACCTCCTGTCCATTCTCCTCCACCTCCTGTTCACTCTCCTCCACCACCTGTCCACTCTCCACCACCTCCCGTCCATTCTCCTCCACCTCCTGTTCACTCTCCTCCACCACCTGTCCACTCTCCACCACCTCCCGTCCATTCTCCTCCTCCCCCTGTTTACTCTCCACCACCTCCCATCCATTCTCCTCCACCTCCTGTTCACTCTCCACCACCTCCCGTCCATTCTCCTCCACCTCCTGTTCACTCTCCACCACCTCCCGTCCATTCTCCTCCACCACCTCCCGTCCATTCTCCTCCTCCACCTGTTCACTCTCCACCACCTCCCGTCCATTCTCCACCCCCACCAGTTCATTCTCCGCCACCACCCGTGTACTCCCCACCACCACCAGTGCATTCTCCACCACCACCAATACACTCTCCACCACCTCCTACACCCTCTATTTCACCTCCTCCTTTTGAAGATGTCGTTCTTCCCCCTCACTTCGGCTCTTCTTATGCTTCACCCCCTCCACCTATCATTCCCGGCTACTAA 2667 0.4859 MSSEIVTKPLIWPLTCPSLPLNITLSNSFFSHLFYKSLGAFQGSTSHKMATSYFLLLSLFLLSSSVSHALSNVEASFIVRRQLLHLHENDELSDNYADNYETNLTFPNPRLKSAYIALEALKKAIYSDPSNFTANWEGPNVCSYNGVFCEKALDDPKIDVVAGIDLNHADIAGYIPPEIGLLTDLALFHINSNRFCGVLPKSFSKLKLLYELDISNNRFVGRFPEPVLLIPDIKFLDLRFNEFEGELPSELFNKSLDAIFLNNNRFTSTIPQNMGSSPASVMVFAYNNLTGCLPSSIGNMTKTLNEFVLINNNLTGCLPVEIGKLEQVYVFDISQNNFVGMLPRTFDGLKNAEHLSIGHNKLTGFVPRNVCSLPNLVNFTFSYNYFNGEEEGCVPPKKDVVLDDENNCIPNRPKQKVADVCNVVISKHVDCKCGSGNPSHSSNPPTTPSSPSPKSPSESQPSSPPKVETPKPQPQPTPSTPKPQPSPTPSTPKTQEPSPTSSTPNPPTPKPQEPKPTPSPSNPPTPKPQPPKATPSPSNPPTPQPQPPKATPSPSNPPTPKPQPPKATPSPSNPSTPQAPKVAPPPEEDPHREAPRQRQRPSESPPPLVQSPPPPVHSPPPHVPSPPPPIVHSPPPPIHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPLVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPIHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPIHSPPPPTPSISPPPFEDVVLPPHFGSSYASPPPPIIPGY* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0297 888 Pfam Leucine rich repeat 328 384 IPR001611 GO:0005515
Gso6g0297 888 MobiDBLite consensus disorder prediction 444 584 - -
Gso6g0297 888 MobiDBLite consensus disorder prediction 434 888 - -
Gso6g0297 888 Pfam Leucine rich repeat N-terminal domain 116 149 IPR013210 -
Gso6g0297 888 PRINTS Proline rich extensin signature 443 455 - -
Gso6g0297 888 PRINTS Proline rich extensin signature 458 474 - -
Gso6g0297 888 PRINTS Proline rich extensin signature 478 490 - -
Gso6g0297 888 PRINTS Proline rich extensin signature 502 523 - -
Gso6g0297 888 MobiDBLite consensus disorder prediction 585 599 - -
Gso6g0297 888 Gene3D Ribonuclease Inhibitor 114 408 IPR032675 -
Gso6g0297 888 MobiDBLite consensus disorder prediction 600 868 - -
Gso6g0297 888 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 662 764 - -
Gso6g0297 888 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 746 885 - -
Gso6g0297 888 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 522 673 - -
Gso6g0297 888 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 50 432 - -
Gso6g0297 888 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 746 885 - -
Gso6g0297 888 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 50 432 - -
Gso6g0297 888 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 662 764 - -
Gso6g0297 888 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 522 673 - -
Gso6g0297 888 SUPERFAMILY L domain-like 121 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0297 Gso-Chr6 2756575 2759465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0297 69 540 Trihelix Transcription Factor Family AT4G33970 55.187 1.28e-173 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0297 - - gmx:121175033 864.374