Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0294 ATGTACACTACTTGGCATACAGGAATGGCAACCTTTGCACCCTTGCCAGAGCCAGACCTATCCTTAAACATAAGCCCACCCTTCATTTCAGATTCTGATGCCAAACAAGTGGGAATAAGCTGCAACGGATTAACATTAACTACCAAAATGCTTTACAACGATATGTGCTCAACCTCGGATTCTGGTAGCAGTGAAAGCGATTTAAGCCACGAAAATGGTTTTTTCCTCATGGACACTGCCTACAACCTTGGCCATCATGAACCGACTTTGAGCTTAGGCATCGAAACAGAAAATTTGAATCCTTATCCTGTCCAACAAGGAGCACTCTCGAGAAACAACTTCAGTCATCACCTCCACAACTACCAACCTCACACCAATACCCTTGATTTCAAGAGAAATGCTAGAGTCATTCATGGTGTGAAAAGAAACATCAGAGCTCCTAGAATGCGATGGACTACGACCCTCCATGCTCATTTTGTTCATGCGGTTCAGCTTCTTGGTGGTCATGAAAGGGCAACTCCGAAGTCAGTGTTAGAGTTAATGAATGTTAAGGATCTAACTCTATCTCACGTGAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCTCTGACAAAGGCAGCGCAGGTTATGGGCAGACAGGTATAGGATTGAGCCAAAAGCCAGGGATTGTCGATCTGCATGGAGTCTTAGCTTGCGAGAGACCCGATTTACCACAGCCACTGCTAAAATTCCAAAGGGCGTCATGGCAATCATCAAAAGAGACAAATTCAATAAATTATACACAGAACCCCATAATCAATTCGATGTATTCTCATCTCAAAGGAAACCAAACCATGGTGGGTGGACAGCATTATGGAGGCCTGTCAAATTGCATGAAGGAGAAATTGGATTCTTGCTCTTTGTCACGTTCCGATATGACGCTTGACCTAGAATTTACCCTTGGAAGGCCCACTAGTTGCAAACAGACCACGCGGAATCAAGAGAATTAA 993 0.4391 MYTTWHTGMATFAPLPEPDLSLNISPPFISDSDAKQVGISCNGLTLTTKMLYNDMCSTSDSGSSESDLSHENGFFLMDTAYNLGHHEPTLSLGIETENLNPYPVQQGALSRNNFSHHLHNYQPHTNTLDFKRNARVIHGVKRNIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLSHVKSHLQMYRTVKSSDKGSAGYGQTGIGLSQKPGIVDLHGVLACERPDLPQPLLKFQRASWQSSKETNSINYTQNPIINSMYSHLKGNQTMVGGQHYGGLSNCMKEKLDSCSLSRSDMTLDLEFTLGRPTSCKQTTRNQEN* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0294 330 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 323 - -
Gso6g0294 330 SUPERFAMILY Homeodomain-like 144 201 IPR009057 -
Gso6g0294 330 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 323 IPR044847 GO:0000976|GO:0006355|GO:0010158
Gso6g0294 330 Pfam Myb-like DNA-binding domain 148 199 IPR001005 -
Gso6g0294 330 Gene3D - 146 203 - -
Gso6g0294 330 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 147 200 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0294 Gso-Chr6 2738092 2741138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0294 70 221 G2-like Transcription Factor Family AT5G42630 55.128 1.07e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso6g0294 Myb_DNA-binding 9.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0294 - - gmx:100780143 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0312 4 2812832 2816421 Gso6g0294 6 2738092 2741138 GST
Gso14g0670 14 6713593 6718589 Gso6g0294 6 2738092 2741138 PCT
Gso17g2086 17 40515902 40520927 Gso6g0294 6 2738092 2741138 PCT
Gso6g0294 6 2738092 2741138 Gso14g0670 14 6713593 6718589 PCT
Gso6g0294 6 2738092 2741138 Gso17g2086 17 40515902 40520927 PCT