Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0273 ATGACGGAACCTCAGAATCCTTCACCATTGACACATTCTCCAGCGTTAGAAATCGCACCTCAAACTCAACCACTGCCACCTCCCAAAAAGAAACGAAACCTCCCTGGAATGCCAGATCCAGATGCTGAAGTGATTGCTTTGTCACCGAAGACGCTGTTGGCGACGAACCGTTTCGTGTGCGAGATCTGCAACAAAGGCTTCCAGCGCGACCAGAATCTACAGCTTCACCGACGCGGCCACAACTTGCCGTGGAAGCTGCGGCAGCGAGGGAGCAAAGAACCGCAGAAGAAAGCTTACGTGTGTCCCGAACCTTCCTGCGTCCACCACAACCCCGCAAGGGCGCTCGGCGACCTCACCGGCATCAAGAAGCACTTCTGCAGAAAACACGGTGAGAAAAAGTGGCAATGCGAACGCTGCTCTAAGAAATACGCCGTACACTCCGATTGGAAGGCTCATATGAAAACTTGCGGCACCAGAGAGTACCGATGCGACTGCGGCACCTTGTTCTCTAGGAGGGATAGTTTCATCACGCACAGAGCATTTTGCGATGTCTTAGCGCAAGAGAGCGCAAGGGCCCAGGACCAAGCCCAAGGTGGTAGCAGCAATAGCTACGTGGTTGTTGTGTCTTCTTCGCCGCCTACGCCTCCACTCACTCCCTCTGCGTCTGTGGTGTCTCCAACTTTGTCCATTCAGAGCTCAGAAATTCCGGAAAACCCATCAACGAAGGTGTCACCGACGTCTCCAAACGCATCGTGTTTCGTGACAAGCAGCAGCAGCACCCCCTCCAGTACCACCAGTGTTTTTGCAAGTGTTTTAGCACCGTCGACAACACCAACAACTCCTTCACAATCACCATCAAATTCAACTTGTTCATTCTCCAACCTCATGTCAAACTTGGCTCGTTCGGAAAACTCCAATGCCTTAATGAGAGAACCCACATCCCTCTCCCTCTCCACACCACCCTATCACTCCAACAATGACCCTCTTCATTACACTGCATTACCCCAACCTGCACTATCTGCCACTGCACTACTCCAGAAGGCAGCTCAGATGGGTGCTTCAAATGCATCCCTTCTTCGTGGATTAGGCTTAGCAAGAACATCCTCCTCCTTCGGGAAAGACGAGGGTGTTAACATTAATGCAACCACAACATTACAATGGAATGGCCAAGTGAAGCAAGAGAATCATCCAGTGGTGGATAACCTTGGGCTTGGGCTTCCATGTGGGAGTGGGAGTGTGCCAGATGTGATGATGGGCCCTACTACTCCATTTGTGGGCCAGCCCATGACCCGTGATCTTCTTGGTCTGAGCGTCGGTGGCGGGGCAACAAGCAGGGGTGGTCTCTCTGCTTTACTCACCTCTTTTGGAGGAAACTTTGATTCGCCGAGTGAGGGAGGAGTTCACCGGTAG 1410 0.5234 MTEPQNPSPLTHSPALEIAPQTQPLPPPKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSKEPQKKAYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWQCERCSKKYAVHSDWKAHMKTCGTREYRCDCGTLFSRRDSFITHRAFCDVLAQESARAQDQAQGGSSNSYVVVVSSSPPTPPLTPSASVVSPTLSIQSSEIPENPSTKVSPTSPNASCFVTSSSSTPSSTTSVFASVLAPSTTPTTPSQSPSNSTCSFSNLMSNLARSENSNALMREPTSLSLSTPPYHSNNDPLHYTALPQPALSATALLQKAAQMGASNASLLRGLGLARTSSSFGKDEGVNINATTTLQWNGQVKQENHPVVDNLGLGLPCGSGSVPDVMMGPTTPFVGQPMTRDLLGLSVGGGATSRGGLSALLTSFGGNFDSPSEGGVHR* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0273 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Gso6g0273 469 MobiDBLite consensus disorder prediction 1 41 - -
Gso6g0273 469 Gene3D Classic Zinc Finger 38 106 - -
Gso6g0273 469 Gene3D Classic Zinc Finger 112 192 - -
Gso6g0273 469 SUPERFAMILY beta-beta-alpha zinc fingers 57 155 IPR036236 -
Gso6g0273 469 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 462 - -
Gso6g0273 469 SMART c2h2final6 99 129 IPR013087 -
Gso6g0273 469 SMART c2h2final6 134 154 IPR013087 -
Gso6g0273 469 SMART c2h2final6 58 80 IPR013087 -
Gso6g0273 469 MobiDBLite consensus disorder prediction 1 18 - -
Gso6g0273 469 Pfam Zinc-finger of C2H2 type 58 80 - -
Gso6g0273 469 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Gso6g0273 469 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 11 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0273 Gso-Chr6 2567693 2570989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0273 29 454 IDZ Gene Family AT5G66730 50.630 2.78e-130 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso6g0273 zf-met 0.0033 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0273 K25869 - gmx:100818095 869.381