Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0239 ATGTCCATGGCCTCATCAAGTGGAAACTCCTCCATTAGCACAAAATCTCAGAGCTCTGGCTCCGAGGGTGATTTGCAGGTTGTGGTAGACGAGAGAAAGAAGAAGAGAAAACAATCGAATCGCGAATCGGCGAGAAGATCTCGGATGCGAAAGCGTAAGCACTTGGACGAACTGACGAAGCAGGTTTCACAGCTCGCAAAGGGCAACGGCGAAATCCTCGGCACCATAGACATAACCACACAGCATTATCTGAACGTTGAGGCAGAGAATTCGATTCTGAGGGCCCAAATGGAGGAGCTTAGCCAACGGCTCCAATCGTTAAACGACATCGTCGACGGTATCATCAACCTCACCAACGCAACCACCGCCTACGAAAGGGACTGTTATCTAACAAGCGCACAAAATATCACCACCAAGAACAACACGCTCTGTCTTAACCAACAAGCCGTTTTTCAGTGGTGA 462 0.4913 MSMASSSGNSSISTKSQSSGSEGDLQVVVDERKKKRKQSNRESARRSRMRKRKHLDELTKQVSQLAKGNGEILGTIDITTQHYLNVEAENSILRAQMEELSQRLQSLNDIVDGIINLTNATTAYERDCYLTSAQNITTKNNTLCLNQQAVFQW* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0239 153 MobiDBLite consensus disorder prediction 38 53 - -
Gso6g0239 153 Coils Coil 83 117 - -
Gso6g0239 153 PANTHER BZIP TRANSCRIPTION FACTOR 44 3 148 - -
Gso6g0239 153 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 35 50 IPR004827 GO:0003700|GO:0006355
Gso6g0239 153 SMART brlzneu 28 92 IPR004827 GO:0003700|GO:0006355
Gso6g0239 153 Gene3D - 30 78 - -
Gso6g0239 153 CDD bZIP_plant_GBF1 33 83 IPR045314 GO:0003700|GO:0006355
Gso6g0239 153 MobiDBLite consensus disorder prediction 1 24 - -
Gso6g0239 153 MobiDBLite consensus disorder prediction 1 58 - -
Gso6g0239 153 SUPERFAMILY Leucine zipper domain 32 84 IPR046347 GO:0003700|GO:0006355
Gso6g0239 153 Pfam bZIP transcription factor 32 78 IPR004827 GO:0003700|GO:0006355
Gso6g0239 153 PANTHER BZIP TRANSCRIPTION FACTOR 3 148 - -
Gso6g0239 153 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 30 93 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0239 Gso-Chr6 2305747 2307065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0239 28 114 bZIP Transcription Factor Family AT4G34590 63.218 2.05e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso6g0239 bZIP_1 9.9e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0239 K25786 - gmx:100809015 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0260 4 2381698 2382905 Gso6g0239 6 2305747 2307065 GST