Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0228 ATGCTGAAATCGGGCATGGGAATTGAGGAGAGAAAGCAAGTGAAGAAGCCAGCACAAGCCAGCTCGAGAAAAGGGTGCATGAGAGGGAAAGGAGGTCCCGAGAATGCTAGTTGCACCTACAAAGGTGTGAGGCAGAGAACATGGGGAAAATGGGTTGCTGAAATCCGTGAACCCAATCGAGGTGCTAGGCTCTGGCTCGGGACTTTTGAGACCTCTCATGAAGCTGCTTTGGCTTATGATGCTGCTGCACGTAAGCTCTATGGCTCTGATGCCAAACTCAACTTACCAGAGCTCTCTATCAAATCACAATCTCAGTGTCCACCACCACCTTCTTCTGTTTCCAACAACACTCAGATTCCTCAAATGGAGAACCTGCAGCAGCAGATTCAAAACAATTACATGGACATGGCTACATGTTCTAATAATTTCAACAACAACACCAATAATCCTTCAGAAGTTTCCATGGCCTCTCAGCAGGTTGGAGTTGGAGTACCAATTTACACCAGTGACTCCATCGTGTCTCTTCCCTTGGACACCAATCCCAAGCCTGTGGAGAATGATGGTGACTTTCGTCCTTCGTGGGGTACAATGAATGAGGGTTTGCCAGTTTTTGATGATTCTATTTGGGCTGAAGCTGCCATGTCTCTAGATTTTCCTCAAATTGCAGCAGAGACTGCGATTTATTCATCGGGTAACAACTTGGCCGATGTGGGTGTGTGGGACTCTCTGCAAACCCCATGGTGCATGTAA 750 0.4733 MLKSGMGIEERKQVKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSDAKLNLPELSIKSQSQCPPPPSSVSNNTQIPQMENLQQQIQNNYMDMATCSNNFNNNTNNPSEVSMASQQVGVGVPIYTSDSIVSLPLDTNPKPVENDGDFRPSWGTMNEGLPVFDDSIWAEAAMSLDFPQIAAETAIYSSGNNLADVGVWDSLQTPWCM* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0228 249 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Gso6g0228 249 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 240 - -
Gso6g0228 249 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Gso6g0228 249 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Gso6g0228 249 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 14 240 - -
Gso6g0228 249 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Gso6g0228 249 MobiDBLite consensus disorder prediction 1 38 - -
Gso6g0228 249 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Gso6g0228 249 MobiDBLite consensus disorder prediction 1 17 - -
Gso6g0228 249 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Gso6g0228 249 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Gso6g0228 249 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0228 Gso-Chr6 2204438 2205814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0228 15 246 AP2-EREBP Transcription Factor Family AT1G75490 43.460 3.66e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso6g0228 AP2 7.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0228 - - gmx:100797850 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0247 4 2293225 2294534 Gso6g0228 6 2204438 2205814 GST
Gso14g0600 14 5877683 5878999 Gso6g0228 6 2204438 2205814 PCT
Gso17g2155 17 41200779 41201969 Gso6g0228 6 2204438 2205814 PCT
Gso6g0228 6 2204438 2205814 Gso14g0600 14 5877683 5878999 PCT
Gso6g0228 6 2204438 2205814 Gso17g2155 17 41200779 41201969 PCT