Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0221 ATGGCTGGTTTCTTCTCTCTAGGCGGATCACAAAACAAGGAAGAAGAGGAAGTAGAAAAAGGAGGAGACAAGAATAACCTATTATTGTTGAGGAACGAGGAGATCTACAACAGCAAGGGTGGGTTCGAGATATGGCCACAGTCGTCGTCCTCATATCATCAGCATCAGAATCAGGCATACCAAAACTACTTTGCATTTGGAGTGGGTCCTAGTCGCAGGAACAGATCGGAAGATGTTTCATTGTGCGTGTCTGATCATGAGTCTACGAGATTTGGATTAACTGTTATGAGGTCTGGAGTAAGCAGCAGCATGAGCATGAACTGTCAGGACTGTGGGAACCAAGCCAAGAAAGACTGTTCCCATCTCAGATGCAGAACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACTTGGGTTCCCGCAGCCAAGCGCCGCGAACGACACCAACAACTCGCTGCGTTGCAGCAACAACATCAACATCCTAAACGACATCACAGAGACACTACTACTACTCAACTTGCCTCCGCTCCACAACCCATCATAGGGTTAGAGCTGGGACAATTCCCACCTGAAGTGAGCACTTCGGCGGTGTTTCGGTGTGTGAGAGTGAGCGCAGTGGACGCTTCAGATGAACAGTGTGCGTATCAAACCTCTGTCAACATCGGAGGACATGTTTTCAAGGGATTTCTCTACGATCAAGGTCCTGAAAGTTCTTACACTACTAGTGCAGCAGCTGAGGGTTCATCCGGTGGCGAACCTCAACCACTTGGTTTAATAACTGGAGCCACCACAGCCACAAGTGGGAACAACCCATTTGACCCTTCACTTTACCCAGCTCCTTTGAATGCTTTCATGGCTGGTACGCAATTCTTCCAACACCCAAGGTCCTAG 906 0.489 MAGFFSLGGSQNKEEEEVEKGGDKNNLLLLRNEEIYNSKGGFEIWPQSSSSYHQHQNQAYQNYFAFGVGPSRRNRSEDVSLCVSDHESTRFGLTVMRSGVSSSMSMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERHQQLAALQQQHQHPKRHHRDTTTTQLASAPQPIIGLELGQFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGFLYDQGPESSYTTSAAAEGSSGGEPQPLGLITGATTATSGNNPFDPSLYPAPLNAFMAGTQFFQHPRS* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0221 301 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 299 - -
Gso6g0221 301 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 299 IPR007818 GO:0003700|GO:0006355
Gso6g0221 301 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 192 240 IPR006511 -
Gso6g0221 301 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 107 149 IPR006510 -
Gso6g0221 301 Pfam Domain of unknown function (DUF702) 105 241 - -
Gso6g0221 301 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0221 Gso-Chr6 2135425 2138024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0221 1 300 C2H2 Transcription Factor Family AT1G19790 46.499 7.60e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gso6g0221 DUF702 5e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0221 - - gmx:100805274 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0081 4 747503 748879 Gso6g0221 6 2135425 2138024 GST
Gso14g1825 14 50621111 50623930 Gso6g0221 6 2135425 2138024 PCT
Gso17g2160 17 41244018 41246791 Gso6g0221 6 2135425 2138024 PCT
Gso6g0221 6 2135425 2138024 Gso14g1825 14 50621111 50623930 PCT
Gso6g0221 6 2135425 2138024 Gso17g2160 17 41244018 41246791 PCT