Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0219 ATGGAAGGATTGGATGGTTTGATAGAGAGGCTTTTGGAAGTAAGGAAGAACAGAGGCAAACAAATTCAACTGGTAGAGTCAGAAATTCGCAGCCTTTGCAGCACGGCAAAAGATCTCTTCCTCAGGCAGCCAAACCTGTTGGAATTGGAAGCTCCCATTAACGTTTGTGGTGATATACACGGGCAATATCCAGACCTGTTGCGAGTGTTGGAGTACGGTGGGTTTCCGCCGGATTCGAATTACCTATTCCTTGGAGACTACGTGGACAGAGGAAAACAGAGCGTGGAAACAATATGCCTGCTGCTCGCCTACAAGATAAAATACCCAGAAAACTTTTTCCTTCTCCGAGGAAACCACGAGTGTGCCTCTATTAACAGAATCTACGGGTTTTACGACGAGTGCAAGCGCAGATTCAGCGTCCGTCTCTGGAAGATATTCACAGATTGCTTCAACTGTTTGCCCGTGGCCGCAGTGATCGATGACAAAATCCTCTGCATGCACGGCGGGCTTTCCCCGGACATGGAGAGCCTGAATCAGATCAAAGCCATAGAGAGGCCCGTGGACGTGCCCGACCAGGGCCTCTTATGCGACCTCCTCTGGGCCGATCCCGACAACGAAATCAGTGGCTGGGGCGAGAATGATAGGGGCGTCTCCTACACTTTCGGCCCCGATAAGGTCTCCGAGTTCTTGAAGAAACACGATCTCGATCTCATTTGCAGGGCCCACCAGGTCGTCGAAGATGGCTACCAATTCTTCGCTGACAGGCAGCTCGTTACCATCTTCTCTGCCCCAAACTATTGCGGAGAGTTCAACAATGCCGGTGCCCTCATGTGCGTCGACCAAACTTTACTCTGTTCCTTTCAGATTGTCAAACCCTTTGGCACCTTTAGAGGAAAACTCACTTCTTAA 909 0.5028 MEGLDGLIERLLEVRKNRGKQIQLVESEIRSLCSTAKDLFLRQPNLLELEAPINVCGDIHGQYPDLLRVLEYGGFPPDSNYLFLGDYVDRGKQSVETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFSVRLWKIFTDCFNCLPVAAVIDDKILCMHGGLSPDMESLNQIKAIERPVDVPDQGLLCDLLWADPDNEISGWGENDRGVSYTFGPDKVSEFLKKHDLDLICRAHQVVEDGYQFFADRQLVTIFSAPNYCGEFNNAGALMCVDQTLLCSFQIVKPFGTFRGKLTS* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0219 302 CDD MPP_PP1_PPKL 4 292 - -
Gso6g0219 302 SUPERFAMILY Metallo-dependent phosphatases 19 294 IPR029052 -
Gso6g0219 302 Gene3D - 2 296 IPR029052 -
Gso6g0219 302 ProSitePatterns Serine/threonine specific protein phosphatases signature. 115 120 IPR006186 GO:0016787
Gso6g0219 302 Pfam Serine-threonine protein phosphatase N-terminal domain 4 50 IPR031675 -
Gso6g0219 302 PRINTS Serine/threonine phosphatase family signature 52 79 IPR006186 GO:0016787
Gso6g0219 302 PRINTS Serine/threonine phosphatase family signature 81 108 IPR006186 GO:0016787
Gso6g0219 302 PRINTS Serine/threonine phosphatase family signature 114 138 IPR006186 GO:0016787
Gso6g0219 302 PRINTS Serine/threonine phosphatase family signature 148 174 IPR006186 GO:0016787
Gso6g0219 302 PRINTS Serine/threonine phosphatase family signature 177 204 IPR006186 GO:0016787
Gso6g0219 302 PRINTS Serine/threonine phosphatase family signature 234 254 IPR006186 GO:0016787
Gso6g0219 302 PRINTS Serine/threonine phosphatase family signature 256 272 IPR006186 GO:0016787
Gso6g0219 302 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 293 - -
Gso6g0219 302 Pfam Calcineurin-like phosphoesterase 52 244 IPR004843 GO:0016787
Gso6g0219 302 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 293 - -
Gso6g0219 302 SMART pp2a_7 24 294 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0219 Gso-Chr6 2112950 2114478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0219 31 240 Calmodulin-binding Proteins AT5G63870 30.800 1.54e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0219 K06269 - gmx:100804212 629.402