Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0216 ATGAAGATCCAGTGCGACGTGTGTAACAAACAGCAGGCATCGTTGTTCTGCACCGCCGACGAAGCCGCCCTATGCGACGGCTGCGACCACCGCGTCCACCACGCCAACAAGCTCGCCTCCAAACACCAACGCTTCTCCCTCAGCCACCCCTCTGCAAAACATTTTCCTCTCTGCGATGTTTGCCAGGAGAGAAGAGCCTTTGTGTTTTGTCAGCAAGATAGAGCGATTCTGTGCAAAGAGTGTGACGTGCCCGTTCATTCTGCCAACGACCTCACCAAGAACCATAACAGGTTTCTTCTCACTGGGATTAAGTTTTCTGCCCTCGATTCTCCTTCAACACCTCCTAAGCCTGCAGGTGGAAACTCCCTAACAAATCAACAACCACAACAACAAACTGGTTTCACAGGTAGCAGCATATCAGAATACTTGATAAACACTATCCCAGGCATGGAGTTCGAAGATTTCCTCGATTCACATTCTCTTCCCTTTGCTTGCTCCAAGAATAGTGATGACATGATGTTGTCGATGTTTGGTGAGGGAAACATGGTTTCGTTCTCAGCCGGAGGGATCTGGGTTCCTCAAGCACCATCTTCAGTACAAATGGATCAGCAGAGTGGGTACAAAGACACATGGGAAACTAGCATTAGATCAAGTTTTGGGGATGATAGTTTATTAGTTCCACAGATGACTCCTCCCAGCAATGTGTTTAATAATAAGAGATCCAGGCTTCTATGGTAA 738 0.477 MKIQCDVCNKQQASLFCTADEAALCDGCDHRVHHANKLASKHQRFSLSHPSAKHFPLCDVCQERRAFVFCQQDRAILCKECDVPVHSANDLTKNHNRFLLTGIKFSALDSPSTPPKPAGGNSLTNQQPQQQTGFTGSSISEYLINTIPGMEFEDFLDSHSLPFACSKNSDDMMLSMFGEGNMVSFSAGGIWVPQAPSSVQMDQQSGYKDTWETSIRSSFGDDSLLVPQMTPPSNVFNNKRSRLLW* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0216 245 MobiDBLite consensus disorder prediction 115 133 - -
Gso6g0216 245 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Gso6g0216 245 Gene3D Classic Zinc Finger 1 97 - -
Gso6g0216 245 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gso6g0216 245 CDD Bbox1_BBX-like 57 100 - -
Gso6g0216 245 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Gso6g0216 245 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Gso6g0216 245 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 243 - -
Gso6g0216 245 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gso6g0216 245 SMART bboxneu5 53 100 IPR000315 GO:0008270
Gso6g0216 245 CDD Bbox1_BBX-like 5 47 - -
Gso6g0216 245 MobiDBLite consensus disorder prediction 110 133 - -
Gso6g0216 245 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0216 Gso-Chr6 2088171 2089555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0216 1 245 C2C2-CO-like Transcription Factor Family AT1G75540 38.438 2.71e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gso6g0216 zf-B_box 6.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0216 - - gmx:100794842 514.612