Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0213 ATGGCAACAACGGTTATATTCTTCAGCTTAACCCTCGTCGCATTCTTCGCTACCCTAAACATAACCTTCGCCCACAACAACACTGCGTTAGAGATTCAAGCCTTAACCTCTTTCAAGCGCAACCTCCACGACCCTCTCGGTTCCTTGGACACTTGGGACCCATCCACGCCATCAGCACCCTGCGACTGGCGCGGCATTGTCTGCCACAACAACCGAGTCCACCAGCTCCGCTTACCGCGTCTCCAACTCGCCGGTCAACTCGCTCCGAATTCTCTTTCCAATCTTCTTCAACTCCGCAAACTCAGTCTCCACTCCAACAACCTCAACTCCTCCATCCCCCTTTCTCTCACGCGCTGCGTCTTTCTGCGCGCCGTTTACCTCCACAACAACAAACTCTCCGGCCACCTTCCTCCGCCGCTCCTAAACCTCACCAACCTCCAAATCCTTAACCTCGCCGGCAACCTCCTCACTGGAAAAGTCCCCGGCCACCTCTCCGCCTCCCTCCGTTTCCTCGACCTCTCCGACAACGCCTTCTCTGGCGACATTCCGGCGAACTTCAGCTCCAAATCCTCTCAGCTCCAGCTCATCAACCTCTCTTACAACAGCTTCACCGGAGGAATACCAGCCTCCATCGGAACGCTGCAATTTCTTCAGTACCTATGGTTAGACTCAAACCACATTCACGGAACCCTACCTTCTGCTCTCGCGAACTGTTCCTCTCTGGTGCACCTGACCGCAGAGGATAACGCTCTCACTGGACTTCTTCCTCCCACCCTCGGAACCATGCCGAAGCTTCAAGTGCTTTCGCTTTCGCGGAACCAGCTTTCCGGTTCGGTCCCCGCGTCTGTGTTCTGCAACGCGCACCTACGAAGCGTGAAGCTCGGGTTTAATTCCCTCACGGGATTTTACACGCCGCAAAACGTGGAATGCGACAGCGTTTTGGAGGTTTTGGATGTGAAAGAGAATCGCATTGCTCACGCGCCGTTTCCCTCGTGGTTGACCCACGCGGCGACGACGTCGTTGAAGGCCCTCGATCTTTCTGGAAACTTCTTTACCGGTTCTCTGCCGGTGGACATTGGGAATCTTTCTGCGTTGGAAGAGTTGAGAGTGAAGAATAATTTGTTATCCGGTGGAGTTCCGCGTAGCATTGTGAGATGTAGGGGTTTAACGGTTCTTGATCTTGAGGGTAACCGGTTCTCTGGGTTAATTCCTGAGTTTCTTGGGGAACTGAGGAACCTGAAGGAGTTGTCTCTTGCCGGTAACAAATTTACCGGTTCGGTGCCTTCTAGTTATGGAACGCTTTCTGCGCTTGAGACGCTGAATTTAAGTGATAATAAGTTAACCGGTGTGGTGCCTAAGGAGATCATGCAATTGGGGAACGTGAGCGCTTTGAATTTGAGTAATAACAAATTTTCAGGTCAAGTTTGGGCCAATATTGGAGATATGACGGGTTTGCAGGTTCTTAATTTGAGTCAGTGTGGGTTTTCAGGTAGGGTTCCTAGTTCGTTGGGGAGTTTGATGAGACTAACGGTGTTGGATTTGAGCAAGCAGAACCTCTCGGGTGAGTTGCCCCTTGAGGTTTTCGGGTTACCGAGTCTTCAAGTTGTGGCGCTTCAAGAGAACCATTTGAGTGGTGATGTTCCTGAGGGTTTCAGCAGCATAGTTAGTCTGCGGTATCTTAATCTCAGTTCAAATGAATTTGTTGGTAACATTCCAATAACTTATGGGTTCCTTAGTTCCTTGACGGTTCTCTCTTTGTCTCACAATGGTGTTTCTGGTGAAATACCTCCTGAGATTGGTGGTTGTTCGCAACTTCAAGTTTTGCAGCTGCGGTCAAATTTTCTAGAGGGTAACATTCTGGGTGATATCTCTCGTCTCTCTCGTTTAAAGGAGCTTAATTTGGGGCACAATAGGTTGAAAGGTGATATCCCAGATGAAATATCAGAGTGTCCTTCTTTGAGTTCACTCTTGTTGGATAGTAATCACTTCACGGGTCATATACCAGGTTCATTGTCAAAATTGTCAAATTTGACGGTGTTGAACCTTTCTTCGAATCAATTGACAGGGAAAATTCCGGTTGAACTATCAAGCATTTCTGGTTTGGAGTATTTAAATGTGTCTAGTAATAACCTTGAGGGTGAGATTCCTCACATGCTAGGTGCTACATTCAATGACCCTTCTGTGTTTGCAATGAACCAAGGGTTATGCGGGAAGCCCTTGCACAGAGAATGTGCGAATGAAAAAAGGAGAAAGAGGAGAAGGCTGATAATCTTCATAGGCGTGGCCGTGGCCGGTTTATGCCTCCTGGCGCTGTGTTGTTGTGGTTATGTATACAGCCTCTTGAGGTGGCGCAAGAAGCTTCGTGAAAGGGTGACCGGTGAGAAGAAACGGAGCCCCACAACAAGTAGTGGAGGAGAGAGAGGCAGCAGAGGGAGTGGGGAAAACGGGGGACCAAAACTAGTGATGTTCAACAACAAGATCACGTTAGCGGAGACATTGGAGGCAACGAGAAACTTCGATGAAGAGAACGTGTTGAGCAGGGGAAGATACGGCCTCGTGTTCAAAGCTTCCTACCAGGACGGAATGGTTCTCTCTATTCGTCGTTTTGTTGATGGGTTCACAGATGAAGCCACCTTCCGCAAGGAAGCAGAATCACTAGGCAAAGTGAAGCATCGAAATTTAACAGTTCTACGTGGTTACTATGCAGGCCCACCCGATATGAGACTTCTTGTGTACGACTACATGCCCAACGGGAACTTAGGAACACTACTTCAAGAGGCGTCTCAGCAAGATGGCCATGTGTTGAATTGGCCAATGCGTCATCTTATCGCGCTAGGAATTGCTCGGGGTCTAGCTTTCTTGCATTCGATGCCAATAGTTCATGGTGACGTGAAGCCTCAAAATGTTCTCTTTGATGCAGATTTTGAGGCCCATTTGTCTGAATTTGGGTTGGAGCGGTTGACATTAGCAGCACCAGCAGAAGCATCGTCGTCCTCCACCGCAGTTGGGTCTTTAGGGTATGTTTCACCGGAAGCTGCATCGAGTGGGATGGCCACAAAGGAGGGTGATGTGTATAGCTTTGGGATTGTGTTGTTGGAGATACTAACGGGGAAGAAGCCGGTGATGTTCACGGAGGATGAGGACATAGTGAAGTGGGTGAAGAAGCAGTTACAAAGGGGACAAATTTCGGAGTTGTTGGAGCCAGGGTTGCTTGAGCTTGACCCAGAGTCTTCGGAATGGGAAGAGTTTTTGTTGGGTGTGAAAGTTGGTCTCCTATGCACAGCGACGGATCCTCTTGATCGACCATCCATGTCTGACGTTGCTTTCATGCTCCAAGGTTGCCGGGTTGGACCAGAAATTCCATCTTCAGCTGATCCCACAACTCTACCTTCCCCTGCTTGA 3402 0.4927 MATTVIFFSLTLVAFFATLNITFAHNNTALEIQALTSFKRNLHDPLGSLDTWDPSTPSAPCDWRGIVCHNNRVHQLRLPRLQLAGQLAPNSLSNLLQLRKLSLHSNNLNSSIPLSLTRCVFLRAVYLHNNKLSGHLPPPLLNLTNLQILNLAGNLLTGKVPGHLSASLRFLDLSDNAFSGDIPANFSSKSSQLQLINLSYNSFTGGIPASIGTLQFLQYLWLDSNHIHGTLPSALANCSSLVHLTAEDNALTGLLPPTLGTMPKLQVLSLSRNQLSGSVPASVFCNAHLRSVKLGFNSLTGFYTPQNVECDSVLEVLDVKENRIAHAPFPSWLTHAATTSLKALDLSGNFFTGSLPVDIGNLSALEELRVKNNLLSGGVPRSIVRCRGLTVLDLEGNRFSGLIPEFLGELRNLKELSLAGNKFTGSVPSSYGTLSALETLNLSDNKLTGVVPKEIMQLGNVSALNLSNNKFSGQVWANIGDMTGLQVLNLSQCGFSGRVPSSLGSLMRLTVLDLSKQNLSGELPLEVFGLPSLQVVALQENHLSGDVPEGFSSIVSLRYLNLSSNEFVGNIPITYGFLSSLTVLSLSHNGVSGEIPPEIGGCSQLQVLQLRSNFLEGNILGDISRLSRLKELNLGHNRLKGDIPDEISECPSLSSLLLDSNHFTGHIPGSLSKLSNLTVLNLSSNQLTGKIPVELSSISGLEYLNVSSNNLEGEIPHMLGATFNDPSVFAMNQGLCGKPLHRECANEKRRKRRRLIIFIGVAVAGLCLLALCCCGYVYSLLRWRKKLRERVTGEKKRSPTTSSGGERGSRGSGENGGPKLVMFNNKITLAETLEATRNFDEENVLSRGRYGLVFKASYQDGMVLSIRRFVDGFTDEATFRKEAESLGKVKHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSMPIVHGDVKPQNVLFDADFEAHLSEFGLERLTLAAPAEASSSSTAVGSLGYVSPEAASSGMATKEGDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTATDPLDRPSMSDVAFMLQGCRVGPEIPSSADPTTLPSPA* 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0213 1133 Gene3D Transferase(Phosphotransferase) domain 1 915 1119 - -
Gso6g0213 1133 ProSiteProfiles Protein kinase domain profile. 839 1120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0213 1133 Pfam Protein tyrosine and serine/threonine kinase 842 1058 IPR001245 GO:0004672|GO:0006468
Gso6g0213 1133 Pfam Leucine rich repeat 651 711 IPR001611 GO:0005515
Gso6g0213 1133 Pfam Leucine rich repeat 411 471 IPR001611 GO:0005515
Gso6g0213 1133 Pfam Leucine rich repeat 508 566 IPR001611 GO:0005515
Gso6g0213 1133 Pfam Leucine rich repeat 340 399 IPR001611 GO:0005515
Gso6g0213 1133 PRINTS Leucine-rich repeat signature 437 450 - -
Gso6g0213 1133 PRINTS Leucine-rich repeat signature 674 687 - -
Gso6g0213 1133 ProSiteProfiles Leucine-rich repeat profile. 628 650 IPR001611 GO:0005515
Gso6g0213 1133 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Gso6g0213 1133 MobiDBLite consensus disorder prediction 791 820 - -
Gso6g0213 1133 SMART LRR_typ_2 262 286 IPR003591 -
Gso6g0213 1133 SMART LRR_typ_2 626 650 IPR003591 -
Gso6g0213 1133 SMART LRR_typ_2 143 167 IPR003591 -
Gso6g0213 1133 SMART LRR_typ_2 434 457 IPR003591 -
Gso6g0213 1133 SMART LRR_typ_2 578 602 IPR003591 -
Gso6g0213 1133 SMART LRR_typ_2 214 238 IPR003591 -
Gso6g0213 1133 SMART LRR_typ_2 410 433 IPR003591 -
Gso6g0213 1133 SMART LRR_typ_2 530 553 IPR003591 -
Gso6g0213 1133 SMART LRR_typ_2 362 386 IPR003591 -
Gso6g0213 1133 SMART LRR_typ_2 95 119 IPR003591 -
Gso6g0213 1133 SMART LRR_typ_2 674 698 IPR003591 -
Gso6g0213 1133 Gene3D Ribonuclease Inhibitor 479 753 IPR032675 -
Gso6g0213 1133 PANTHER LRR RECEPTOR-LIKE KINASE 2 1129 - -
Gso6g0213 1133 SUPERFAMILY RNI-like 76 491 - -
Gso6g0213 1133 ProSitePatterns Serine/Threonine protein kinases active-site signature. 959 971 IPR008271 GO:0004672|GO:0006468
Gso6g0213 1133 Gene3D Ribonuclease Inhibitor 384 478 IPR032675 -
Gso6g0213 1133 Gene3D Ribonuclease Inhibitor 189 305 IPR032675 -
Gso6g0213 1133 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Gso6g0213 1133 SUPERFAMILY RNI-like 464 720 - -
Gso6g0213 1133 Gene3D Phosphorylase Kinase; domain 1 815 914 - -
Gso6g0213 1133 SMART serkin_6 839 1110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0213 1133 Gene3D Ribonuclease Inhibitor 306 383 IPR032675 -
Gso6g0213 1133 SUPERFAMILY Protein kinase-like (PK-like) 819 1122 IPR011009 -
Gso6g0213 1133 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 1129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0213 Gso-Chr6 2052289 2055965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0213 1 1133 Receptor kinase-like Gene Family AT4G36180 61.888 0.0 1332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Gso6g0213 PK_Tyr_Ser-Thr 3.8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0213 - - gmx:100801571 2105.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0236 4 2152319 2155943 Gso6g0213 6 2052289 2055965 GST