Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0212 ATGAGCAGAAGGCCACCACCTGATCCTGTGGCAGTGTTACGTGGCCATCGAGCTTCGGTCACAGACATTTCTTTTCATCCCTCTAAGCCAATATTATTCTCCGGTTCTGCTGATGGTGAAGTGCGGATTTGGGATACACTTCAGCATCGGACAGTGTCATCAGCATGGTTACATAGTGCCGCACATGGTATTGTTGCTGTTGCTGGTAGTTCTTCCCTTGGAAACAATAAATTTGTCAGCCAGGGTAGGGATGGAACTGTAAAAGTTTGGGAACTTGGTGATGCTGGTTTGTCCAGGATTCCAGTACTTACAATCAAGACAAATACTTACCACTTTTGCAAGTTTTCCATGGTGAAGAAGCATTCTGTTTGGTCAAAAGAAGGGAAAGCATCAGAAGATTCCTATAGATCAGAGCTAGGAGGAGTGCCTGATAGAGAAATTCTGGAGGATAGAAGAGAAGAGGCTTATACCAATCAAAGTTGTTCTGAAAGCTTTGGAGAAAATATGTATAATGAAGGGCTACAATATGTGGCTTTGTCAGGGGAAAAGTCCTCTGAGGTTGAAATTTGGGATCTCAAGTCAGCTGAAAAAGTTGTACAACTCCCTTCAAGCAATCCTAGTAACTCTTCAAGTCCTTGCAACAAAGGGATGTGCATGGCACTTCAATTATTTTTACCGTCTGAATCACAAGGATTTTTAAATGTCTTGGCTGGATATGAGGATGGTTCCATGCTTTGGTGGGATGTACGGAATCCCGGAGTTCCAGTAACTTCTGTAAAATTCCATTCTGAGCCAGTTCTGAGCGTCTGTAATGATGGGTCTTGCAAAGGGGGTATCTCAGGAGCTGCAGATGACAAAATTGTAATGTACAGCTTGGATCATTCTTCGGGTACATGTGTGGTCAAGAAAGAAATCAGTTTGGATCGACCGGGCATCTCAGGCACCTCAATTCGGCCTGATGGAAAAATTGCTGCAACTGCTGGCTGGGACCACAGGTTGAGGATATATAATTACCGCAAAGGAAATGCTTTAGCTATTTTAAAGTATCACCATGGCACATGCAATGCTGTAACTTATTCGTCTGATTGTAAGCTTATGGCCTCTGCATCGGAGGACACAACCGTGGGGCTATGGGAATTGTATCCTCCTCGAATATGA 1158 0.4378 MSRRPPPDPVAVLRGHRASVTDISFHPSKPILFSGSADGEVRIWDTLQHRTVSSAWLHSAAHGIVAVAGSSSLGNNKFVSQGRDGTVKVWELGDAGLSRIPVLTIKTNTYHFCKFSMVKKHSVWSKEGKASEDSYRSELGGVPDREILEDRREEAYTNQSCSESFGENMYNEGLQYVALSGEKSSEVEIWDLKSAEKVVQLPSSNPSNSSSPCNKGMCMALQLFLPSESQGFLNVLAGYEDGSMLWWDVRNPGVPVTSVKFHSEPVLSVCNDGSCKGGISGAADDKIVMYSLDHSSGTCVVKKEISLDRPGISGTSIRPDGKIAATAGWDHRLRIYNYRKGNALAILKYHHGTCNAVTYSSDCKLMASASEDTTVGLWELYPPRI* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0212 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 347 385 - -
Gso6g0212 385 SMART WD40_4 340 379 IPR001680 GO:0005515
Gso6g0212 385 SMART WD40_4 252 291 IPR001680 GO:0005515
Gso6g0212 385 SMART WD40_4 298 337 IPR001680 GO:0005515
Gso6g0212 385 SMART WD40_4 6 45 IPR001680 GO:0005515
Gso6g0212 385 SMART WD40_4 48 91 IPR001680 GO:0005515
Gso6g0212 385 PANTHER TRANSDUCIN BETA-LIKE 3 3 384 - -
Gso6g0212 385 PANTHER - 3 384 - -
Gso6g0212 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Gso6g0212 385 Gene3D - 313 384 IPR015943 GO:0005515
Gso6g0212 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Gso6g0212 385 ProSitePatterns Trp-Asp (WD) repeats signature. 366 380 IPR019775 -
Gso6g0212 385 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Gso6g0212 385 Pfam WD domain, G-beta repeat 344 378 IPR001680 GO:0005515
Gso6g0212 385 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Gso6g0212 385 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Gso6g0212 385 PRINTS G protein beta WD-40 repeat signature 366 380 IPR020472 -
Gso6g0212 385 Gene3D - 153 312 IPR015943 GO:0005515
Gso6g0212 385 Gene3D - 3 114 IPR015943 GO:0005515
Gso6g0212 385 SUPERFAMILY WD40 repeat-like 4 379 IPR036322 GO:0005515
Gso6g0212 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 347 385 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0212 Gso-Chr6 2036141 2043175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0212 235 384 U-box Gene Family AT2G33340 26.623 6.11e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0212 K24770 - gmx:100800482 783.097