Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0186 ATGACTCTTGAAGATTTCTTTACCTTGACCGAGATGAAAGATGGGCTCACAGCACCTTCTCGGGTGCAGGAGCTGGTCTCTGTGATGCAAAAGGAGAAAGATAGTGAGGTTAAAAATGCTGCTGATGCGACAAGGCAGTGGGCTTCTGTTGCTAGCACTATTGCTGCTACAGAGAATAAAGATTGCCTTGATCTTTTTATTCAATTAGATGGACTTTGCTTCATTAATAGATGGTTAAAGGATGCCCAAAATTTTGGGGTTGATGCAAATGACAGCTTCGTTGAAGAATCAATCACTGCAATGTTACGTGCAGTTGAAAAGCTGCATATAGACAGTGAGAAGTCAATGTCTTCAGGAATTCGCATCACTGTAAGTAATCTTCTTGACCATCATAGTGCTAGGGTTCAGGATAGAGCAAGAACATTGTTTGACAGCTGGAAGGGAGTTGGAAATGGTGATACTGAATCTCATGAAGTGGAGCTTGCTAAGGTTGACAATGCAAGTGACAAGATTGTCAGGGAGGAAAGGCAGCCATCTGCTTTGAATGAAGATGGCAATGATAATGATCCTGCATCAGGACTAATTGGATGTGAGAAATCTCTATTGAGAAGCTCGGATGATTTACTGGTACATAGTTCTGATAATGTGCCCCAGTTATCTGCCAGTGTGGAATGTATTGACATCAAAGAGGGATCAGCAAACCATGTTGCTGGTGTTCCTTCTTCTGCTCAAGAAGTTGCTCCCACTCATGAAGGATTGCCTATATGCACTACGGGTGAGACCACTTCGGCTGGAACCTGTAACTTTTCTGTTACAAATCAAAGCAGTTTTGAAGGACAGTCAGATGTGGTACAGTTAAGTGACTTGGCTAAAATGGAAAAGCAGGAGCAAAACGTTAATGACGCTCCAGAAAAATTTGGAGCACCAGAGATCTGTTCTGTGTCCTCTAATAAGCCAGAGCCCGAGCCTGAGCCTGTTTCCATGGTTGCTTGTGAAGCCAAAGCACCAGAGTCTGTGAAAGAACCAGCTTTAGAGCAAAATGTTGAACACAGTGAGGATGATGTTTGTCATAAATTAACTACTTCTGCTAGTATGAGGACACCTGCATCTGACAGGAGTGGGGAAGATGATACAACTAGCATTATACAAGTTTTTAAAGCTGCAGAAAATGATAATGATTGTTGTTCTAATGCCTTGCAGGGCACATCAGTCAGTGACAGTAACTTGGGAAAGACTGAAGTGTTAGACATGTCTGTCTCTGGAACAGAATATGTCACAGCATCAAAGGAAGATAAGGGCCACGAAGAAGATACATCAATTGGTTCTGATTGTAGTAAACCTGGAATAGATTTCAGAAGCTCTAACATAATTGACAAGAGAGGTTCTGACAATGAACTTGACTGTGCCATTGTGGATGCTTTGGAATTTGCTCGACAAGTTGCTCAGGAAGTTAATAGAGAAGTCAGTAGTTCTTCAGAAAAAATCTCAGAAGACAGAATCAGGCAACCGGGCAGTCCAAATTCTGTAAGAAAAGAGGACCAGCTCACTCCTGTCCCTCCCAAGGAGGTTTCCTCCCGACAAAGCCATGCTACTGAGGCATATTCAATGGAGAGGCATGCAAGTATTTTAGACAACAATGAGGCTGAGCCAAAATGCAGACCTGATATGGTGTCCTTAGAGGTGACTGAAACAGCTCAAGATTCAGCAGGTAATTCAGAGAAACGACTCTGCGGCTTTGATCTCAACGAAGTTGGTGCTGATGATATGGATGTTTCTGTAAATGCTACGTCTACCCCAATACCAGTTGTCTCTGCTTCAAGGCCTGTGCCAACTCCTGGGTTGCCTGTGGCCCCTTTGCAGTTTGAGGGAACACTTGGATGGAAAGGGTCAGCTGCCACCAGTGCCTTTCGACCTGCATCGCCTCGTAAAAATTGTGATAATGACAGGAATCTTTCTGTTGATATGAACTTTGATGCTTCCAAGCAGAGGCAGGATTGGCTTGATTTTGATCTAAATGTGACCGAGAGTGAAGAAGGCAATGTAAAACCTACTGCTGAATCTTCAGGCAGGGCTTCTGGGCAATCGTCAGTTGAGTTTAGTCCTAAAAAATCAAGCAGGCTTGAATTTGATTTGAACAGTACTGGTGATGATGGTGACACCCAACCTTCAGATCACAGAATGGAGGGACAACTCTTTCTTGGAAGAAATGGATATTGGAGCCAATCCCCTGCATCGTCGTCATCATCAATGCAGCCATCTGTTAGAAACATTGATTTGAATGATAGGCCATGCCTTCAAACTGATTTGGTAGACCAGGGGCCCAGTAAGTCTGCTCATCTTATCAATGCATTTGGTTCTAAATCATCAGATGCTCCTGTTATCTCTCTTCTGGGCGCCAAGGTAGAAGTTGGTAAAAATGAATGTGTTCCTCAAATGTCGTCTTTGCAGAATGGCAAGGCTATTGAACCTGCGATAGATCTTAGAATGTCAAGAGCAGGTAGCGTTTTAGGGATGACCCCCACAGTACCCTTCAATCATTCACCTGTTTTTGGGTATAATGGAGTGGCATCAGCATCAGTGGCACCCGCAATGTCTTTTTCATCAGCCATGTACGGATCAGGTGGCACAATTCCATACATGGTGGACTCAAGAGGAGCTCCAGTTGTCCCTCAAGTGGGTGGATCTTCATCAACTGTCCTTTCATCTTACTCTCAGCCACCAATCTTTATGAACATGACTGGTACACAACTTGGTCTGAATGGATTTGGACCTTCACGTCCTAACTTGGACCTGAACTCTGGCTTCATGATTGAGGGTGGGAATAGAGACACATTAGCTGCAAGGCAATTTTTCTTTCCTGGTCAGGGCAGGGCTGTGGAGGAGCAAGTAAGATCCATGCCACAACCCTCAAGTTCAGGGGTTAGTGGGAAACGAAAGGAACCAGACAGTGGTTTGGAACCCTACCCATTTATCTACAAACATCCGCAACCTCCTGGAAGTAGCTTCTAA 3009 0.441 MTLEDFFTLTEMKDGLTAPSRVQELVSVMQKEKDSEVKNAADATRQWASVASTIAATENKDCLDLFIQLDGLCFINRWLKDAQNFGVDANDSFVEESITAMLRAVEKLHIDSEKSMSSGIRITVSNLLDHHSARVQDRARTLFDSWKGVGNGDTESHEVELAKVDNASDKIVREERQPSALNEDGNDNDPASGLIGCEKSLLRSSDDLLVHSSDNVPQLSASVECIDIKEGSANHVAGVPSSAQEVAPTHEGLPICTTGETTSAGTCNFSVTNQSSFEGQSDVVQLSDLAKMEKQEQNVNDAPEKFGAPEICSVSSNKPEPEPEPVSMVACEAKAPESVKEPALEQNVEHSEDDVCHKLTTSASMRTPASDRSGEDDTTSIIQVFKAAENDNDCCSNALQGTSVSDSNLGKTEVLDMSVSGTEYVTASKEDKGHEEDTSIGSDCSKPGIDFRSSNIIDKRGSDNELDCAIVDALEFARQVAQEVNREVSSSSEKISEDRIRQPGSPNSVRKEDQLTPVPPKEVSSRQSHATEAYSMERHASILDNNEAEPKCRPDMVSLEVTETAQDSAGNSEKRLCGFDLNEVGADDMDVSVNATSTPIPVVSASRPVPTPGLPVAPLQFEGTLGWKGSAATSAFRPASPRKNCDNDRNLSVDMNFDASKQRQDWLDFDLNVTESEEGNVKPTAESSGRASGQSSVEFSPKKSSRLEFDLNSTGDDGDTQPSDHRMEGQLFLGRNGYWSQSPASSSSSMQPSVRNIDLNDRPCLQTDLVDQGPSKSAHLINAFGSKSSDAPVISLLGAKVEVGKNECVPQMSSLQNGKAIEPAIDLRMSRAGSVLGMTPTVPFNHSPVFGYNGVASASVAPAMSFSSAMYGSGGTIPYMVDSRGAPVVPQVGGSSSTVLSSYSQPPIFMNMTGTQLGLNGFGPSRPNLDLNSGFMIEGGNRDTLAARQFFFPGQGRAVEEQVRSMPQPSSSGVSGKRKEPDSGLEPYPFIYKHPQPPGSSF* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0186 1002 MobiDBLite consensus disorder prediction 703 724 - -
Gso6g0186 1002 MobiDBLite consensus disorder prediction 165 194 - -
Gso6g0186 1002 MobiDBLite consensus disorder prediction 490 506 - -
Gso6g0186 1002 MobiDBLite consensus disorder prediction 427 441 - -
Gso6g0186 1002 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Gso6g0186 1002 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 998 - -
Gso6g0186 1002 MobiDBLite consensus disorder prediction 165 182 - -
Gso6g0186 1002 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 151 IPR035441 -
Gso6g0186 1002 MobiDBLite consensus disorder prediction 299 325 - -
Gso6g0186 1002 MobiDBLite consensus disorder prediction 427 447 - -
Gso6g0186 1002 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 156 IPR035441 -
Gso6g0186 1002 MobiDBLite consensus disorder prediction 677 702 - -
Gso6g0186 1002 MobiDBLite consensus disorder prediction 961 1002 - -
Gso6g0186 1002 MobiDBLite consensus disorder prediction 677 727 - -
Gso6g0186 1002 MobiDBLite consensus disorder prediction 485 532 - -
Gso6g0186 1002 Pfam TFIIS helical bundle-like domain 101 147 IPR017923 -
Gso6g0186 1002 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 998 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0186 Gso-Chr6 1770990 1777562 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gso6g0186 Med26 2.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0186 - - gmx:102664074 1968.36