Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0180 ATGGAGTTGTGGAGTGTGGTGTTTGTGTGTTGTGTTTTATGTTATAGTTTTTGTCACAGTGCAGAGGCTATCGTTAAGCTAGGAGGAAATGAAACAATCCCAGCACTGATTTTGTTTGGGGATTCGATCGTTGACACAGGAACTAACAATAACCTAATAACACTGCTTAAGTGCAATTTCCCTCCTTATGGGAGGGATTTCCAGGGTGGGATACCAACAGGAAGATTCAGCAATGGCAAGGTCCCTGCTGACTTCATAGCGGAAGAGTTGGGAATCAGCGAATATATAACACCATACAAGAGTCCTAGTTTGCAGCCTGGTGATCTCCTCAAGGGAGTCAACTTTGCTTCGGGTGGCTCCGGATATGATTCTTTGACCGCACAAATAGTGTCTGTCACACCATTATCTGAGCAACTAGAGCAATTCAAAGAATACATAGGAAAGCTCAAGGGAAATTTTGGAGAAGCAAAAACCAACTTCATCTTGTCCAAAAGTTTAGTACTTGTGGTGTCAAGCAGCAACGACATTGCCAATACTTATTTTGCATCAGGAGTTAGGAAAGTGACTTATGATGTTTCGGGTTATACTGATATGTTGGTGCAAGAAGCCTCTTCTTTCGTTAAGGAATTATATGGATTGGGGGCAAGGAGAATAGGAGTGTTTGGTGCACCTCCACTAGGATGTTTGCCATTCGTACGAACGTTGTTTGGAGGTCTAGAGAGAGTGTGCACCGAAGAAATAAACATGGCATCAAAATTGTTTAACTCTAAACTATCTTCAGAGCTGCACAACCTAAACCAAAGCTTGCCTCAAGCGAAGGTGGTGTATATCCGTATTTACGACTCTTTGCTCAATATCATCCAAAACCCAATCAATTATGGATTTGATGTTGCTGACAGAGGATGCTGCGGTACAGGGACGGTAGAGGCGGCTTTTCTGTGTAATCCGTTAGATCCAACAACCTGCGTAGATGATTCCAAATATGTGTTTTGGGACAGCTACCATCCCACACAAAAGACATACCAAATTCTTGTTGGTGAAATCCTCAACAAATATATAATCAGCTTCTCTTGA 1074 0.4227 MELWSVVFVCCVLCYSFCHSAEAIVKLGGNETIPALILFGDSIVDTGTNNNLITLLKCNFPPYGRDFQGGIPTGRFSNGKVPADFIAEELGISEYITPYKSPSLQPGDLLKGVNFASGGSGYDSLTAQIVSVTPLSEQLEQFKEYIGKLKGNFGEAKTNFILSKSLVLVVSSSNDIANTYFASGVRKVTYDVSGYTDMLVQEASSFVKELYGLGARRIGVFGAPPLGCLPFVRTLFGGLERVCTEEINMASKLFNSKLSSELHNLNQSLPQAKVVYIRIYDSLLNIIQNPINYGFDVADRGCCGTGTVEAAFLCNPLDPTTCVDDSKYVFWDSYHPTQKTYQILVGEILNKYIISFS* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0180 357 Pfam GDSL-like Lipase/Acylhydrolase 37 344 IPR001087 GO:0016788
Gso6g0180 357 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 36 47 IPR008265 GO:0006629|GO:0016298
Gso6g0180 357 PANTHER GDSL ESTERASE/LIPASE EXL3 1 354 - -
Gso6g0180 357 SUPERFAMILY SGNH hydrolase 35 351 - -
Gso6g0180 357 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 1 354 - -
Gso6g0180 357 Gene3D SGNH hydrolase 25 353 IPR036514 -
Gso6g0180 357 CDD SGNH_plant_lipase_like 34 352 IPR035669 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0180 Gso-Chr6 1690489 1692976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0180 30 349 Pollen Coat Proteome AT1G75910 38.154 1.20e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0180 - - gmx:112997680 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1867 14 51105986 51111246 Gso6g0180 6 1690489 1692976 PCT
Gso17g2204 17 41758627 41763643 Gso6g0180 6 1690489 1692976 PCT
Gso6g0180 6 1690489 1692976 Gso14g1865 14 51085732 51090690 PCT
Gso6g0180 6 1690489 1692976 Gso17g2202 17 41735595 41740645 PCT