Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0177 ATGGTTACCACCACCGTTGATTCTTCCTCTAACCATCACTCACCCACTGCTGCTGATACCTCTAATAATTTCCCGCAAAAAACCATGCCATCTCCGTGGGCCCAGGTCGTTCGCGGTGCCGACGCTGAACCCAACGATCAATCGCCGCCATCTTCTTCCTCTTCCTCGTCCCTCGATTCCATTAATTCTAACGGTCCCGCCGTTCAAACAAGCGATATCGCCGTGAAACCTGCGTGGAAGAAACCGGAGGCCAATGGCGTCGCCGAAGTTGGGCCTGTAATGGGCGCTCATTCTTGGCCCGATTTATCCGAGTCCACCAAGCCCACCGCTAAATTGACATCTGACTCCTCTGTTAAGACTGCTGCTGATGAAGAGTCAACCACCACTCCTCAGGGTCCTGTTACTTCAGACCCCCCTCAGAAACAAGCCACTGCTAATGCAAAACCTAGTCCTACTCCTGCAATGAACTATGGTATGGCTAATAGACAAAGATCAATGAAGCAGCGTGGAGGGGCAAATGGCAATAATGTTGGGTCTGGTCCTGTTCAGAACAACTTCTCTGGTACTACCCCAAATCTTCCTCCACCACCACCTCCGCCCCCCTTTCCTGTTCTTCTGATGCCTCCAAGTACATTTGCCCATGGGATACCAGGGGCTCCTGTTCCTACTCCAAGGGATCCTTACAGGAACAATAACTGGGATGCAAGACCTCAACATGGGGGTTTTATGCCACCAATGAATGAGCATCGGAGTCCCTCTCACAGGGGCAATGCTGGGCACCATCCACGTGGAGAAGGTCCCTATCACAACAGTTATGGCAACAGGCGCGATCAGGACCGTGTAGGTTATGCAAATACTAGAGATGCTCATGTAAATCAACAGAGGATGCCTCCAAGGGGATTAATGAGGCCCCCACCACCTAATCCTGCTCCATTTATGGGGCCTCAGCCTATGCGACCCCTTGCAAACCCTGCTGGGTTTCCTGAATACTATTATTTCCCAACACTTCAATTTGAACCCTTTGGGGGCATGCCATTTTTCACACATGCACCTCCTCCTGCGATGTTCTACCCGGTTGCAGAAACTCCTCTCACCAATACAATAGCCAACCAAATTGATTATTACTTTAGTGATGCTAATTTAGTGAAGGATGAGTATTTAAGGTCCAACATGGATGAACAGGGATGGGTTCCTATTTCTTTGATTGCAAGCTTCCCACGTGTTAGAAGTTTGACAAGCAACATTAAGTTGATATTGGATTCATTGAGAACTTCCACTTTTGTGGAAGTGCAGGGGGACAAGTTGAGGAGGCGCACTGAGTGGATGAAGTGGCTTCCGTCTGTTCAGCTTCTGGCCAAGCCTAGCGAATCAAGTTCTAATAACCTAGCAGCTGATTTTGAAAAGATCACAGTGGATGATGCTAAAGTTAACGCCAAGCCTACGGCAAATGATGATGCTGCAGGAGAGTCCTCAACTCAGTCCCAAGTCCCAAATGATGCTACTACTGTGAGCAGCAATTAA 1521 0.4898 MVTTTVDSSSNHHSPTAADTSNNFPQKTMPSPWAQVVRGADAEPNDQSPPSSSSSSSLDSINSNGPAVQTSDIAVKPAWKKPEANGVAEVGPVMGAHSWPDLSESTKPTAKLTSDSSVKTAADEESTTTPQGPVTSDPPQKQATANAKPSPTPAMNYGMANRQRSMKQRGGANGNNVGSGPVQNNFSGTTPNLPPPPPPPPFPVLLMPPSTFAHGIPGAPVPTPRDPYRNNNWDARPQHGGFMPPMNEHRSPSHRGNAGHHPRGEGPYHNSYGNRRDQDRVGYANTRDAHVNQQRMPPRGLMRPPPPNPAPFMGPQPMRPLANPAGFPEYYYFPTLQFEPFGGMPFFTHAPPPAMFYPVAETPLTNTIANQIDYYFSDANLVKDEYLRSNMDEQGWVPISLIASFPRVRSLTSNIKLILDSLRTSTFVEVQGDKLRRRTEWMKWLPSVQLLAKPSESSSNNLAADFEKITVDDAKVNAKPTANDDAAGESSTQSQVPNDATTVSSN* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0177 506 MobiDBLite consensus disorder prediction 484 506 - -
Gso6g0177 506 MobiDBLite consensus disorder prediction 1 30 - -
Gso6g0177 506 MobiDBLite consensus disorder prediction 270 284 - -
Gso6g0177 506 SMART la 362 440 IPR006630 -
Gso6g0177 506 PANTHER LA-RELATED PROTEIN 1B 8 502 - -
Gso6g0177 506 MobiDBLite consensus disorder prediction 473 506 - -
Gso6g0177 506 MobiDBLite consensus disorder prediction 102 189 - -
Gso6g0177 506 CDD LAM 368 438 - -
Gso6g0177 506 Pfam La domain 368 423 IPR006630 -
Gso6g0177 506 PANTHER LUPUS LA PROTEIN-RELATED 8 502 IPR045180 -
Gso6g0177 506 SUPERFAMILY "Winged helix" DNA-binding domain 355 446 IPR036390 -
Gso6g0177 506 MobiDBLite consensus disorder prediction 248 319 - -
Gso6g0177 506 MobiDBLite consensus disorder prediction 1 201 - -
Gso6g0177 506 MobiDBLite consensus disorder prediction 45 70 - -
Gso6g0177 506 Gene3D - 357 446 IPR036388 -
Gso6g0177 506 MobiDBLite consensus disorder prediction 299 319 - -
Gso6g0177 506 ProSiteProfiles La-type HTH domain profile. 358 447 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0177 Gso-Chr6 1650636 1655373 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0177 K18757 - gmx:100792549 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0196 4 1723409 1729107 Gso6g0177 6 1650636 1655373 GST
Gso14g1869 14 51117224 51121678 Gso6g0177 6 1650636 1655373 PCT
Gso17g2206 17 41777344 41781685 Gso6g0177 6 1650636 1655373 PCT
Gso6g0177 6 1650636 1655373 Gso14g1869 14 51117224 51121678 PCT
Gso6g0177 6 1650636 1655373 Gso17g2206 17 41777344 41781685 PCT