Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0175 ATGCTTGTTTTAGTCAGCTTCCTCGTATTATGCTGTTTCACAATTAGCAATTGCGGCTTCTCTCCTTCTGGGTGGAACAGTGCCCATGCCACTTTTTATGGTGGTATCGATGCCTCTGGGACAAATGGAGGAGCTTGTGGGTATGGGAATATTTTTTCAGCAACAGGTTATGGAACTGATACGACAGCATTGAGTACTGCCTTATTTAACAATGGAGCTTCATGTGGGGAGTGCTACAAAATCACATGCGATTATCGAACAGACCCCAAATGGTGCTTAAAAGGAAAATCAGTAATCGTAACCGCCACAAACTTCTGCCCTCCCAATTTGTCTTTGTCCCCCAACAACGGAGGGTGGTGCAATCCACCTCTCAAACATTTTGACATGTCTCAACCCGCATGGGAAAAGATTGCTATCTATAGAGGAGGGATCGTGCCCGTGTTCTACCAAAGGGTTCCATGCGCGAGGCAGGGAGGAGTTAGGTTCACTATGAATGGGAACAACTACTTTGAGCTTGTATTGATCACCAATGTGGGAGGAGCTGGATCTATCAAATCTGTGTATATCAAAGGCTCAAAAACTGGATGGATGGCCATGACAAGAAACTGGGGAGAAAATTGGCAGTCCAACGAGTATTTGAATGGTCAATCTTTGTCCTTCAAGGTCACCACCACCGATGGTGTAACTAGACTTTTCCGAGGTGTTGTTCCAGCAAATTGGGCTTTTGGCCAGACTTTCCCTACCCGCGTCCAGTTTTAA 759 0.4572 MLVLVSFLVLCCFTISNCGFSPSGWNSAHATFYGGIDASGTNGGACGYGNIFSATGYGTDTTALSTALFNNGASCGECYKITCDYRTDPKWCLKGKSVIVTATNFCPPNLSLSPNNGGWCNPPLKHFDMSQPAWEKIAIYRGGIVPVFYQRVPCARQGGVRFTMNGNNYFELVLITNVGGAGSIKSVYIKGSKTGWMAMTRNWGENWQSNEYLNGQSLSFKVTTTDGVTRLFRGVVPANWAFGQTFPTRVQF* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0175 252 SUPERFAMILY PHL pollen allergen 156 247 IPR036749 -
Gso6g0175 252 Gene3D - 13 155 IPR036908 -
Gso6g0175 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 159 IPR007112 -
Gso6g0175 252 SMART dpbb_1 61 149 IPR007112 -
Gso6g0175 252 Pfam Lytic transglycolase 61 149 IPR009009 -
Gso6g0175 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Gso6g0175 252 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Gso6g0175 252 PANTHER EXPANSIN-A15 2 252 IPR002963 GO:0009664
Gso6g0175 252 SUPERFAMILY Barwin-like endoglucanases 24 177 IPR036908 -
Gso6g0175 252 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Gso6g0175 252 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Gso6g0175 252 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Gso6g0175 252 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Gso6g0175 252 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Gso6g0175 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Gso6g0175 252 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Gso6g0175 252 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Gso6g0175 252 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Gso6g0175 252 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Gso6g0175 252 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Gso6g0175 252 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Gso6g0175 252 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Gso6g0175 252 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Gso6g0175 252 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Gso6g0175 252 PANTHER EXPANSIN 2 252 - -
Gso6g0175 252 Gene3D - 159 252 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0175 Gso-Chr6 1639989 1641269 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0175 61 252 Expansin Gene Family AT1G20190 73.958 6.52e-110 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0175 - - gmx:102662391 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0193 4 1706420 1708331 Gso6g0175 6 1639989 1641269 GST
Gso14g1873 14 51154730 51156693 Gso6g0175 6 1639989 1641269 PCT
Gso17g2210 17 41805155 41807115 Gso6g0175 6 1639989 1641269 PCT
Gso6g0175 6 1639989 1641269 Gso14g1873 14 51154730 51156693 PCT
Gso6g0175 6 1639989 1641269 Gso17g2210 17 41805155 41807115 PCT