LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso6g0173	ATGACTCAAGATCTAGAGATGAAGGATCGCTCAACGCCTTCCAACTCCGTTTCTTCGCCTGCTCCATCTACTCTGCAGCATTTGAAGGAGATAGCGTCTCTTATCGAGACCGGTTCGTACTCGAAGGAAGTTCGTAGAATTGCTCGCGCTGTTCGCCTTACAATTGCGTTGAGGCGGAAATTGACAGCATCCGCTATCTCTTCTTTTCTCGATCATGTTCTCACTCCTGGCTCTGAAGTTCACGCCAAATTGTCTGCGTATCTTCCCAAGGAGGATGATCATGAGATGGAAGTGGACGCTGCAACATCTGCGATTCAAACCCCAGCCAAACACTTGTTGCCCGAGCTAGAAATCTACTGTTACCTGCTTGTACTCCTTTTTCTGATTGATCAGAAAAAATACAGTGAGGCCAAAGCTTGTTCCTCAGCTAGCATTGTTTGGCTGAAGAACATAAACAGGAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCGTATAGCTATGAACTTATGGGAGATCTTGCTGAAATTCGGGGCAACCTTCTTGCATTGCACCGAATTGCCACCCTCCGCCATGATGAGCTGGGTCAGGAAACACTTCTTAATTTGTTACTTCGTAACTACCTTCACTACAACCTATATGATCAGGCTGAGAAGTTGAGGTCGAAGGCTCCTCGATTTGAAGCACATTCAAACCAGCAGTTTTGTCGTTATCTCTTCTACCTAGGGAAAATTCGGACAATTCAGCTGGAGTATACCGATGCAAAAGAGTCTCTCCTGCAGGCCGCCCGGAAAGCTCCTGTTGCTGCACGGGGTTTTCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTACTGTTGGGAGAAATACCTGAGCGGACTGTCTTCATGCAGAAAGGAATGGAGAAAGCTCTAAGGCCTTACTTTGAGCTTACAAATGCTGTGCGGATTGGAGACTTGGAACTGTTTAGGAATATTGCGGACAAGTTTGCCACTACCTTTAATGCAGACAGAACCCATAATTTGATTGTTCGTTTGCGGCATAATGTCATCAGGACTGGTTTACGCAACATCAGCATCTCCTATTCTCGCATCTCTCTAGCTGATGTTGCTAAAAAACTGAGGCTGAACTCTGCAAGTCCTGTTGCAGATGCTGAGAGCATTGTATCAAAGGCTATTCGTGATGGTGCAATTGATGCTACATTGGATCATGCCAATGGTTGGATGGTGTCCAAAGAAACTGGAGATATTTACTCCACAAATGAGCCTCAGTTAGCCTTTAATTCTCGGATTGCTTTCTGTCTTAACATGCACAATGAGGCGGTTCGAGCACTTCGATTTCCACCAAACACACACAAAGAGAAGGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAAGAGCTGGCTAAGCATATTGCAGAGGAGGATGACGATGATTTCTGA	1464	0.4508	MTQDLEMKDRSTPSNSVSSPAPSTLQHLKEIASLIETGSYSKEVRRIARAVRLTIALRRKLTASAISSFLDHVLTPGSEVHAKLSAYLPKEDDHEMEVDAATSAIQTPAKHLLPELEIYCYLLVLLFLIDQKKYSEAKACSSASIVWLKNINRRTVDVIASRLYFYYSYSYELMGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFNADRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSASPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF*	488

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso6g0173	487	Gene3D	-	242	441	-	-
	Gso6g0173	487	Coils	Coil	454	481	-	-
	Gso6g0173	487	SMART	motif in proteasome subunits, Int-6, Nip-1 and TRIP-15	345	438	-	-
	Gso6g0173	487	SMART	PINT_4	345	438	IPR000717	-
	Gso6g0173	487	Pfam	PCI domain	311	416	IPR000717	-
	Gso6g0173	487	SUPERFAMILY	"Winged helix" DNA-binding domain	346	421	IPR036390	-
	Gso6g0173	487	MobiDBLite	consensus disorder prediction	1	23	-	-
	Gso6g0173	487	MobiDBLite	consensus disorder prediction	452	487	-	-
	Gso6g0173	487	Pfam	Proteasome regulatory subunit C-terminal	420	486	IPR013586	GO:0000502\|GO:0030234\|GO:0042176
	Gso6g0173	487	PANTHER	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3	1	487	-	-
	Gso6g0173	487	PANTHER	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3	1	487	-	-
	Gso6g0173	487	MobiDBLite	consensus disorder prediction	452	480	-	-
	Gso6g0173	487	ProSiteProfiles	PCI domain profile.	239	420	IPR000717	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso6g0173	Gso-Chr6	1629840	1633230	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso6g0173	K03033		-	gmx:100814379	920.228

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso4g0192	4	1693912	1697242	Gso6g0173	6	1629840	1633230	GST
	Gso14g1874	14	51157800	51163160	Gso6g0173	6	1629840	1633230	PCT
	Gso17g2211	17	41808284	41813620	Gso6g0173	6	1629840	1633230	PCT
	Gso6g0173	6	1629840	1633230	Gso14g1874	14	51157800	51163160	PCT
	Gso6g0173	6	1629840	1633230	Gso17g2211	17	41808284	41813620	PCT