Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0172 ATGCTCGATTCGGTTCTTCTGGCGCTTTTCTTGCCGTGCCTTGGCATGAGCGGGGTTTTTATCGTCTACATGTGCCTTCTATGGTACGCCACTACCCGCCGCAACCAACCCCCCATTGACGGTCAACCGGTGAAGCCCGTAACTGATAAGGGTCTATCAGCTTTGGAGTTGGAGAAGCTTCCAAAAATCACCGGCAAAGAACTCGTCTTGGGCACCGAATGCGCCGTCTGCCTCGACGAGATCGAGAGCGAGCAACCGGCTAGAGTGGTCCCCGGTTGCAACCATGGATTTCATGTCCAATGCGCTGACACCTGGCTCTCTAAGCACCCTATTTGCCCCGTTTGTAGGACCAAGCTGGACCCGCAAATCTTCACTTCCCAAAGCCCCTGCTGA 393 0.5496 MLDSVLLALFLPCLGMSGVFIVYMCLLWYATTRRNQPPIDGQPVKPVTDKGLSALELEKLPKITGKELVLGTECAVCLDEIESEQPARVVPGCNHGFHVQCADTWLSKHPICPVCRTKLDPQIFTSQSPC* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0172 130 SUPERFAMILY RING/U-box 73 122 - -
Gso6g0172 130 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Gso6g0172 130 Pfam Ring finger domain 73 116 IPR001841 -
Gso6g0172 130 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 127 - -
Gso6g0172 130 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 127 - -
Gso6g0172 130 SMART ring_2 74 115 IPR001841 -
Gso6g0172 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 122 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0172 Gso-Chr6 1617637 1618670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0172 1 130 C3H Transcription Factor Family AT5G42200 58.824 2.69e-52 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0172 K19037 - gmx:100811160 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0189 4 1673774 1675141 Gso6g0172 6 1617637 1618670 GST
Gso14g1876 14 51183897 51185032 Gso6g0172 6 1617637 1618670 PCT
Gso17g2213 17 41822867 41823586 Gso6g0172 6 1617637 1618670 PCT
Gso6g0172 6 1617637 1618670 Gso14g1876 14 51183897 51185032 PCT
Gso6g0172 6 1617637 1618670 Gso17g2213 17 41822867 41823586 PCT