LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso6g0157	ATGGCCTTCGCCATCAGCGCCTTGGTTTGTTCAAACTTGCTCGGAAGGAAGGTTCTAGTCACAAGCAAATCATCCACTCCACTACCATTTCTTTTCAAGAGAAGCATCTTAAAAGCTCAGAATTCAGAGCAAGTCAAATCCGCATCTTCACGGGCTGCTCTAGCTGCACTTATCGTCTCCTCCGCGAGCCTCTCTGTGACCCCAGAAGCCCTAGCCGCTGATAACTTGACCCCTCCCCCCGTGATTGAAGCGCAACAGAGCCAACCCTCATCCCCTTTCTCACAGAACCTCCTCCTCACTGCGCCTAAGCCCCAATCCTCTTCCGACCTCCCCGAAGGCACCAATTGGCGCTACAGCGACTTCTTAAACGCCGTCAAGAAGGGTAAGGTCGAGCGAGTCAGGTTCAGCAAAGACGGTTCTGCCCTCCAACTAACCGCGGTTGACGGCCGTCGCGCCTCCGTTATTGTCCCCAATGACCCGGACCTCATCGACATCCTCGCCATGAACGGCGTCGACATTTCCGTCGCGGAAGGCGAATCCCCCAACAGCTTGTTCAACATCGTTGGCAACTTGCTCTTCCCCTTGCTCGCGTTCGCGGGTTTGTTCTTCCTCTTCCGGAGAGCTCAAGGCGGGCCCGGTGGGCCTGGCGGGATGGGTGGGCCCATGGACTTTGGACGGAACAAGTCCAAGTTCCAGGAAGTCCCCGAAACCGGTGTGAGCTTCGCTGACGTTGCGGGCGCGGACCAAGCGAAGCTTGAGCTCCAAGAGGTTGTTGATTTCTTGAAGAATCCCGATAAGTACACCGCGTTGGGCGCGAAGATTCCGAAGGGGTGTCTTTTGGTGGGGCCACCGGGAACCGGAAAGACCCTTCTGGCGAGGGCGGTGGCGGGAGAAGCTGGGGTGCCGTTTTTCTCGTGCGCGGCTTCGGAGTTCGTGGAGCTTTTCGTGGGGGTTGGTGCTTCGAGGGTGAGGGATCTGTTTGAGAAGGCGAAGGGGAAGGCGCCGTGCATTGTTTTCATTGATGAGATTGACGCCGTTGGGAGGCAGAGAGGGGCGGGGCTAGGAGGTGGAAATGATGAGAGGGAACAAACTATTAATCAGCTTCTTACTGAGATGGATGGGTTTTCTGGTAATTCTGGTGTTATTGTTTTGGCTGCCACTAACAGACCGGATGTTCTTGATTCGGCGTTGTTGAGGCCTGGCCGGTTCGATAGGCAAGTTACTGTGGATAGACCTGATGTTGCCGGCAGAGTTAAAATCCTTCAGGTGCATTCTAGAGGAAAAGCGCTTGCAAAGGATGTTGATTTTGAAAAAATTGCTAGGAGAACCCCTGGATTCACTGGGGCTGATCTGCAGAATTTGATGAATGAGGCGGCTATTCTTGCAGCCAGGCGTGACCTCAAGGAAATAAGTAAAGATGAGATATCTGATGCGCTTGAAAGGATCATAGCTGGACCCGAGAAGAAAAATGCTGTAGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCTGAATATGACCCTGTAGCCAAGATATCAATTATTCCTCGTGGCCAAGCTGGTGGTCTCACATTTTTTGCTCCCAGTGAAGAGAGGCTTGAGTCTGGATTGTACAGTAGAAGTTACCTTGAAAATCAGATGGCTGTTGCCTTGGGTGGAAGGGTTGCCGAAGAGGTTATTTTTGGCCAGGAAAATGTCACCACCGGAGCATCAAATGACTTCATGCAAGTTTCACGAGTGGCAAGGCAGATGGTTGAGAGATTTGGATTCAGCAAAAAAATTGGACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCGGAAGTGAGGGAACTGGTAGAGAGAGCATATTCTAGGGCAACACATATTATCACAACTCACATTGACATCCTTCACAAGCTTGCTCAACTTCTCATAGAAAAAGAAACTGTGGATGGTGAAGAGTTCATGAGTCTATTCATTGATGGAAAAGCTGAATTATATGTTGCATAA	2091	0.5103	MAFAISALVCSNLLGRKVLVTSKSSTPLPFLFKRSILKAQNSEQVKSASSRAALAALIVSSASLSVTPEALAADNLTPPPVIEAQQSQPSSPFSQNLLLTAPKPQSSSDLPEGTNWRYSDFLNAVKKGKVERVRFSKDGSALQLTAVDGRRASVIVPNDPDLIDILAMNGVDISVAEGESPNSLFNIVGNLLFPLLAFAGLFFLFRRAQGGPGGPGGMGGPMDFGRNKSKFQEVPETGVSFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKGKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVERAYSRATHIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVA*	697

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso6g0157	696	Gene3D	-	111	185	-	-
Gso6g0157	696	Gene3D	-	229	411	IPR027417	-
Gso6g0157	696	SUPERFAMILY	FtsH protease domain-like	492	686	IPR037219	GO:0004176\|GO:0004222\|GO:0005524\|GO:0006508
Gso6g0157	696	Gene3D	-	412	487	-	-
Gso6g0157	696	PANTHER	METALLOPROTEASE M41 FTSH	46	688	-	-
Gso6g0157	696	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	239	482	IPR027417	-
Gso6g0157	696	Pfam	Peptidase family M41	492	685	IPR000642	GO:0004176\|GO:0004222\|GO:0005524\|GO:0006508
Gso6g0157	696	Pfam	AAA+ lid domain	433	476	IPR041569	-
Gso6g0157	696	Hamap	ATP-dependent zinc metalloprotease FtsH [ftsH].	1	696	IPR005936	GO:0004176\|GO:0004222\|GO:0016020
Gso6g0157	696	PANTHER	ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED	46	688	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso6g0157	Gso-Chr6	1473071	1476525	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso6g0157	234	687	Miscellaneous Gene Families	AT5G53170	49.561	1.34e-135	416

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso6g0157	K03798		-	gmx:100807408	1260.74

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gso4g0169	4	1502441	1505935	Gso6g0157	6	1473071	1476525	GST
Gso14g1897	14	51424792	51427152	Gso6g0157	6	1473071	1476525	PCT
Gso17g2225	17	41921883	41924343	Gso6g0157	6	1473071	1476525	PCT

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