Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0157 ATGGCCTTCGCCATCAGCGCCTTGGTTTGTTCAAACTTGCTCGGAAGGAAGGTTCTAGTCACAAGCAAATCATCCACTCCACTACCATTTCTTTTCAAGAGAAGCATCTTAAAAGCTCAGAATTCAGAGCAAGTCAAATCCGCATCTTCACGGGCTGCTCTAGCTGCACTTATCGTCTCCTCCGCGAGCCTCTCTGTGACCCCAGAAGCCCTAGCCGCTGATAACTTGACCCCTCCCCCCGTGATTGAAGCGCAACAGAGCCAACCCTCATCCCCTTTCTCACAGAACCTCCTCCTCACTGCGCCTAAGCCCCAATCCTCTTCCGACCTCCCCGAAGGCACCAATTGGCGCTACAGCGACTTCTTAAACGCCGTCAAGAAGGGTAAGGTCGAGCGAGTCAGGTTCAGCAAAGACGGTTCTGCCCTCCAACTAACCGCGGTTGACGGCCGTCGCGCCTCCGTTATTGTCCCCAATGACCCGGACCTCATCGACATCCTCGCCATGAACGGCGTCGACATTTCCGTCGCGGAAGGCGAATCCCCCAACAGCTTGTTCAACATCGTTGGCAACTTGCTCTTCCCCTTGCTCGCGTTCGCGGGTTTGTTCTTCCTCTTCCGGAGAGCTCAAGGCGGGCCCGGTGGGCCTGGCGGGATGGGTGGGCCCATGGACTTTGGACGGAACAAGTCCAAGTTCCAGGAAGTCCCCGAAACCGGTGTGAGCTTCGCTGACGTTGCGGGCGCGGACCAAGCGAAGCTTGAGCTCCAAGAGGTTGTTGATTTCTTGAAGAATCCCGATAAGTACACCGCGTTGGGCGCGAAGATTCCGAAGGGGTGTCTTTTGGTGGGGCCACCGGGAACCGGAAAGACCCTTCTGGCGAGGGCGGTGGCGGGAGAAGCTGGGGTGCCGTTTTTCTCGTGCGCGGCTTCGGAGTTCGTGGAGCTTTTCGTGGGGGTTGGTGCTTCGAGGGTGAGGGATCTGTTTGAGAAGGCGAAGGGGAAGGCGCCGTGCATTGTTTTCATTGATGAGATTGACGCCGTTGGGAGGCAGAGAGGGGCGGGGCTAGGAGGTGGAAATGATGAGAGGGAACAAACTATTAATCAGCTTCTTACTGAGATGGATGGGTTTTCTGGTAATTCTGGTGTTATTGTTTTGGCTGCCACTAACAGACCGGATGTTCTTGATTCGGCGTTGTTGAGGCCTGGCCGGTTCGATAGGCAAGTTACTGTGGATAGACCTGATGTTGCCGGCAGAGTTAAAATCCTTCAGGTGCATTCTAGAGGAAAAGCGCTTGCAAAGGATGTTGATTTTGAAAAAATTGCTAGGAGAACCCCTGGATTCACTGGGGCTGATCTGCAGAATTTGATGAATGAGGCGGCTATTCTTGCAGCCAGGCGTGACCTCAAGGAAATAAGTAAAGATGAGATATCTGATGCGCTTGAAAGGATCATAGCTGGACCCGAGAAGAAAAATGCTGTAGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCTGAATATGACCCTGTAGCCAAGATATCAATTATTCCTCGTGGCCAAGCTGGTGGTCTCACATTTTTTGCTCCCAGTGAAGAGAGGCTTGAGTCTGGATTGTACAGTAGAAGTTACCTTGAAAATCAGATGGCTGTTGCCTTGGGTGGAAGGGTTGCCGAAGAGGTTATTTTTGGCCAGGAAAATGTCACCACCGGAGCATCAAATGACTTCATGCAAGTTTCACGAGTGGCAAGGCAGATGGTTGAGAGATTTGGATTCAGCAAAAAAATTGGACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCGGAAGTGAGGGAACTGGTAGAGAGAGCATATTCTAGGGCAACACATATTATCACAACTCACATTGACATCCTTCACAAGCTTGCTCAACTTCTCATAGAAAAAGAAACTGTGGATGGTGAAGAGTTCATGAGTCTATTCATTGATGGAAAAGCTGAATTATATGTTGCATAA 2091 0.5103 MAFAISALVCSNLLGRKVLVTSKSSTPLPFLFKRSILKAQNSEQVKSASSRAALAALIVSSASLSVTPEALAADNLTPPPVIEAQQSQPSSPFSQNLLLTAPKPQSSSDLPEGTNWRYSDFLNAVKKGKVERVRFSKDGSALQLTAVDGRRASVIVPNDPDLIDILAMNGVDISVAEGESPNSLFNIVGNLLFPLLAFAGLFFLFRRAQGGPGGPGGMGGPMDFGRNKSKFQEVPETGVSFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKGKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVERAYSRATHIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVA* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0157 696 Gene3D - 111 185 - -
Gso6g0157 696 Gene3D - 229 411 IPR027417 -
Gso6g0157 696 SUPERFAMILY FtsH protease domain-like 492 686 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso6g0157 696 Gene3D - 412 487 - -
Gso6g0157 696 PANTHER METALLOPROTEASE M41 FTSH 46 688 - -
Gso6g0157 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 482 IPR027417 -
Gso6g0157 696 Pfam Peptidase family M41 492 685 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso6g0157 696 Pfam AAA+ lid domain 433 476 IPR041569 -
Gso6g0157 696 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 1 696 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gso6g0157 696 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 46 688 - -
Gso6g0157 696 Pfam ATPase family associated with various cellular activities (AAA) 279 410 IPR003959 GO:0005524|GO:0016887
Gso6g0157 696 SMART AAA_5 274 413 IPR003593 -
Gso6g0157 696 CDD AAA 245 410 - -
Gso6g0157 696 Gene3D Peptidase M41 488 691 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso6g0157 696 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 184 685 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gso6g0157 696 ProSitePatterns AAA-protein family signature. 381 399 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0157 Gso-Chr6 1473071 1476525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0157 234 687 Miscellaneous Gene Families AT5G53170 49.561 1.34e-135 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0157 K03798 - gmx:100807408 1260.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0169 4 1502441 1505935 Gso6g0157 6 1473071 1476525 GST
Gso14g1897 14 51424792 51427152 Gso6g0157 6 1473071 1476525 PCT
Gso17g2225 17 41921883 41924343 Gso6g0157 6 1473071 1476525 PCT