Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0143 ATGATGGGAGATGGTGGTGTGATATCATCTGCTGCTACCATGATGGAAGCTCCACCACCTGATGGAACAACAACAACTTCAATGGATTTTGATTACATGGGTGAGCTTTTCTTAGATGGGTGCTGGATGGAGGCCTCTGCTGATGGATCTGATTTCTTGCTGCAAAGTCCTTCATTTTCCAATACCCTCTTTGACCCTTCATTCTCCTGGCCTGCCTTGGAGACCAACCACAATGAATCCCAGGTTGCTGCTTTTGGGAGTCAACAAGAAAGTCATAATAACAACATGGTTAGTGTTGTTGCTGGTGGTGATTATAGTCAGCAGTTTCAGTCTGAGACTCATTCAGTTGAAGGTGCATCTGAAGGTATCAGAAGGTGGTGGTTTGCACCCACACACACTCCCACACCTAGTCCAGGACCTGGGCCTTCTATAATGGAGAAGCTAATAAGGGCCCTCATGTGGATCAAAGATTACAATAGGAACAAAGATATGCTTATACAGATTTGGGTGCCAGTTCATAAAGAGGGTAGGCCGATTCTTGCAGCCGATGATCTTCTGTTCTCGCTTGAATCCAAGTCTCTGAACCTTGCCAAGTACCGCGAAATCTCTGTGACATATAAGTTCTCTGCAGAGGAGAGTGACTCCAAGGAGTTGGCGTGGGGATTGCCCGGTCGAGTGTTTAGGGACAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTTAAAATTGATGAGTATCCAAGAGTTGACCATGCTCAAGAGTATGATGTGCGTGGAACGTTGGCAGTTCCAATCTTTGAGCAAGGAAGCAAGACGTGCTTGGGGGTTATTGAGGTTGTGATGACTACTCAGCAGATTAACTATGGCCCTGAACTTGAGAGTGTTTGCAAAGCACTTGAGGCTGTTGATCTTAGAAGCTCAAAACAATTAAGTATTCAGAATGTGAAGGCATGCAACAGGTCCTATGAAGCTGCACTACCTGAGATTCATGAGGTGTTGAGATCTGCTTGTGAAATGCACAAATTACCTTTAGCTCAAACTTGGGTCCCATGTGTCCAACAAGGCAAAGAGGGGTGCCGGCACTCTGAAGATAATTATCTACTCTGCATATCTCCTGTGGAGCATGCTTGCTATGTTGGTGATCCTTCTATTAGGTCATTTCACGAGGCTTGCACTGAGCATCACTTGTTAAAAGGTGAGGGTGTTGCTGGGGGAGCTTTCATGACAAACCAGCCGTGCTTCTCAGATGATATAACTTCCTTAAGCAAGAAAGACTATCCAATGTCTCATCACGCGAGGTTGTTTGGATTGCGCGCTGCTGTTGCTATACGCCTTCGAAGCATCTATAATAGCACAGATGACTTTGTTCTAGAGTTCTTCTTGCCCGTAGATTGCAATGACATTGAAGAACAGAGAAAGATGCTTACTTCATTGTCCAACATTATACAAAGGGTTTGTCGCAGCTTGCGCGTTATAAGAGAAAAGGAATTGGAGGAAGCTAACTTGTCAGTTAATGAAGTGATAGCCCTTGCAGACAGTGGATTTACTAGGGATGAAATTTGTTCGGAACCCCAACAAAAAGGGATGGTTGCCTCATTGGATACTGAAGAAAAATCAAGTGAAACAATGGGTAGAAAATTCTCTGAACCAAGGCAGCAACAAGAAAGTCCTATTTTAAAAGGAAACCTTGACTGTGTTAGGGAGTGTTCTACGTCTGTTGAGGGTAACTTATCAAGTCCGGGAACAAGTAAAACTGGAGAGAGAAGACGGGTTAAAGCAGAGAAAACTATAACTTTGCAAGTTCTTAGACAATATTTTGCTGGAAGCCTAAAAGATGCTGCCAAGAATATTGGTGTTTGTACTACAACTTTGAAAAGGATCTGCCGGCAGCATGGGATAAAGCGTTGGCCTTCTCGAAAGATCAAAAAGGTTGGCCACTCCTTACAAAAACTTCAACTTGTCATCGACTCGGTTCAAGGTGCCTCTGGTGCATTTCAAATCAATTCCTTCTATTCAAACTTCCCGGATCTAGCTTCTCCAAATTTATCAGGAACTGGCTTCTTCTCAACTTTGAATCAAAGTGATAATCCAAACTCAACAAGCACGCAGCCTGAACATGGCTCATTGAGCCCAGAAGGTGCATCAAAATCACCCTCTTCGTCGAGCAGCCAGAGTTCCATTTCAAGCCATTCCTGCTCTAGCATGTCAGAGCTACAACAGCAGCACACAACTAACATTGCCAGTGACAAAGATCCTGCCACGGTTGGTGAATATTCTGCTGATGTTGTGTTGAAGTTGATCAGAAACGAGGCAAAGCTTAAAAGCCTTAGTCAAGATAGAGCAAAGCTCTTGCCAAGATCACTGAGCCAGGAAACACTTGGTGAACACCCGAAAACTCAGTATCAACTGCCTTTATTGAAAACCAGTAGCAGCAAGGTGGATTCTCACAGAGTAAAAGTCACATATGGAGATGAGAAAACCCGGTTTCGGATGCTGAAAAATTGGGTCTATGAAGATCTTCTGCAGGAAATTGGTAGGAAATTTAATGTGAGTGACATGAGCAAATTTGATGTCAAATACTTGGATGATGATTGTGAGTGGATACTACTCACTTGTGATGCTGATTTAGAGGAGTGCATTGATGTTTGTCAATCTTCCGAGAGTGGTACCATCAAACTTAGTCTACAACCTTCTAGTCATAGTGTGAGAAGTTCTTTAGAATTTAGATAA 2730 0.4348 MMGDGGVISSAATMMEAPPPDGTTTTSMDFDYMGELFLDGCWMEASADGSDFLLQSPSFSNTLFDPSFSWPALETNHNESQVAAFGSQQESHNNNMVSVVAGGDYSQQFQSETHSVEGASEGIRRWWFAPTHTPTPSPGPGPSIMEKLIRALMWIKDYNRNKDMLIQIWVPVHKEGRPILAADDLLFSLESKSLNLAKYREISVTYKFSAEESDSKELAWGLPGRVFRDKVPEWTPDVRFFKIDEYPRVDHAQEYDVRGTLAVPIFEQGSKTCLGVIEVVMTTQQINYGPELESVCKALEAVDLRSSKQLSIQNVKACNRSYEAALPEIHEVLRSACEMHKLPLAQTWVPCVQQGKEGCRHSEDNYLLCISPVEHACYVGDPSIRSFHEACTEHHLLKGEGVAGGAFMTNQPCFSDDITSLSKKDYPMSHHARLFGLRAAVAIRLRSIYNSTDDFVLEFFLPVDCNDIEEQRKMLTSLSNIIQRVCRSLRVIREKELEEANLSVNEVIALADSGFTRDEICSEPQQKGMVASLDTEEKSSETMGRKFSEPRQQQESPILKGNLDCVRECSTSVEGNLSSPGTSKTGERRRVKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQINSFYSNFPDLASPNLSGTGFFSTLNQSDNPNSTSTQPEHGSLSPEGASKSPSSSSSQSSISSHSCSSMSELQQQHTTNIASDKDPATVGEYSADVVLKLIRNEAKLKSLSQDRAKLLPRSLSQETLGEHPKTQYQLPLLKTSSSKVDSHRVKVTYGDEKTRFRMLKNWVYEDLLQEIGRKFNVSDMSKFDVKYLDDDCEWILLTCDADLEECIDVCQSSESGTIKLSLQPSSHSVRSSLEFR* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0143 909 CDD PB1_NLP 816 897 IPR034891 -
Gso6g0143 909 Gene3D - 813 898 - -
Gso6g0143 909 Gene3D - 172 302 IPR029016 -
Gso6g0143 909 ProSiteProfiles PB1 domain profile. 815 898 IPR000270 GO:0005515
Gso6g0143 909 SMART PB1_new 815 898 IPR000270 GO:0005515
Gso6g0143 909 PANTHER PROTEIN NLP4 25 905 - -
Gso6g0143 909 MobiDBLite consensus disorder prediction 1 23 - -
Gso6g0143 909 ProSiteProfiles RWP-RK domain profile. 581 664 IPR003035 -
Gso6g0143 909 Pfam PB1 domain 816 897 IPR000270 GO:0005515
Gso6g0143 909 SUPERFAMILY CAD & PB1 domains 815 900 - -
Gso6g0143 909 MobiDBLite consensus disorder prediction 688 750 - -
Gso6g0143 909 Pfam RWP-RK domain 596 644 IPR003035 -
Gso6g0143 909 PANTHER PROTEIN NLP8 25 905 IPR045012 GO:0003700
Gso6g0143 909 MobiDBLite consensus disorder prediction 688 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0143 Gso-Chr6 1348781 1353467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0143 28 900 NLP Transcription Factor Family AT1G20640 48.832 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso6g0143 PB1 9.3e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0143 - - gmx:100785135 1768.44