LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso6g0143	ATGATGGGAGATGGTGGTGTGATATCATCTGCTGCTACCATGATGGAAGCTCCACCACCTGATGGAACAACAACAACTTCAATGGATTTTGATTACATGGGTGAGCTTTTCTTAGATGGGTGCTGGATGGAGGCCTCTGCTGATGGATCTGATTTCTTGCTGCAAAGTCCTTCATTTTCCAATACCCTCTTTGACCCTTCATTCTCCTGGCCTGCCTTGGAGACCAACCACAATGAATCCCAGGTTGCTGCTTTTGGGAGTCAACAAGAAAGTCATAATAACAACATGGTTAGTGTTGTTGCTGGTGGTGATTATAGTCAGCAGTTTCAGTCTGAGACTCATTCAGTTGAAGGTGCATCTGAAGGTATCAGAAGGTGGTGGTTTGCACCCACACACACTCCCACACCTAGTCCAGGACCTGGGCCTTCTATAATGGAGAAGCTAATAAGGGCCCTCATGTGGATCAAAGATTACAATAGGAACAAAGATATGCTTATACAGATTTGGGTGCCAGTTCATAAAGAGGGTAGGCCGATTCTTGCAGCCGATGATCTTCTGTTCTCGCTTGAATCCAAGTCTCTGAACCTTGCCAAGTACCGCGAAATCTCTGTGACATATAAGTTCTCTGCAGAGGAGAGTGACTCCAAGGAGTTGGCGTGGGGATTGCCCGGTCGAGTGTTTAGGGACAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTTAAAATTGATGAGTATCCAAGAGTTGACCATGCTCAAGAGTATGATGTGCGTGGAACGTTGGCAGTTCCAATCTTTGAGCAAGGAAGCAAGACGTGCTTGGGGGTTATTGAGGTTGTGATGACTACTCAGCAGATTAACTATGGCCCTGAACTTGAGAGTGTTTGCAAAGCACTTGAGGCTGTTGATCTTAGAAGCTCAAAACAATTAAGTATTCAGAATGTGAAGGCATGCAACAGGTCCTATGAAGCTGCACTACCTGAGATTCATGAGGTGTTGAGATCTGCTTGTGAAATGCACAAATTACCTTTAGCTCAAACTTGGGTCCCATGTGTCCAACAAGGCAAAGAGGGGTGCCGGCACTCTGAAGATAATTATCTACTCTGCATATCTCCTGTGGAGCATGCTTGCTATGTTGGTGATCCTTCTATTAGGTCATTTCACGAGGCTTGCACTGAGCATCACTTGTTAAAAGGTGAGGGTGTTGCTGGGGGAGCTTTCATGACAAACCAGCCGTGCTTCTCAGATGATATAACTTCCTTAAGCAAGAAAGACTATCCAATGTCTCATCACGCGAGGTTGTTTGGATTGCGCGCTGCTGTTGCTATACGCCTTCGAAGCATCTATAATAGCACAGATGACTTTGTTCTAGAGTTCTTCTTGCCCGTAGATTGCAATGACATTGAAGAACAGAGAAAGATGCTTACTTCATTGTCCAACATTATACAAAGGGTTTGTCGCAGCTTGCGCGTTATAAGAGAAAAGGAATTGGAGGAAGCTAACTTGTCAGTTAATGAAGTGATAGCCCTTGCAGACAGTGGATTTACTAGGGATGAAATTTGTTCGGAACCCCAACAAAAAGGGATGGTTGCCTCATTGGATACTGAAGAAAAATCAAGTGAAACAATGGGTAGAAAATTCTCTGAACCAAGGCAGCAACAAGAAAGTCCTATTTTAAAAGGAAACCTTGACTGTGTTAGGGAGTGTTCTACGTCTGTTGAGGGTAACTTATCAAGTCCGGGAACAAGTAAAACTGGAGAGAGAAGACGGGTTAAAGCAGAGAAAACTATAACTTTGCAAGTTCTTAGACAATATTTTGCTGGAAGCCTAAAAGATGCTGCCAAGAATATTGGTGTTTGTACTACAACTTTGAAAAGGATCTGCCGGCAGCATGGGATAAAGCGTTGGCCTTCTCGAAAGATCAAAAAGGTTGGCCACTCCTTACAAAAACTTCAACTTGTCATCGACTCGGTTCAAGGTGCCTCTGGTGCATTTCAAATCAATTCCTTCTATTCAAACTTCCCGGATCTAGCTTCTCCAAATTTATCAGGAACTGGCTTCTTCTCAACTTTGAATCAAAGTGATAATCCAAACTCAACAAGCACGCAGCCTGAACATGGCTCATTGAGCCCAGAAGGTGCATCAAAATCACCCTCTTCGTCGAGCAGCCAGAGTTCCATTTCAAGCCATTCCTGCTCTAGCATGTCAGAGCTACAACAGCAGCACACAACTAACATTGCCAGTGACAAAGATCCTGCCACGGTTGGTGAATATTCTGCTGATGTTGTGTTGAAGTTGATCAGAAACGAGGCAAAGCTTAAAAGCCTTAGTCAAGATAGAGCAAAGCTCTTGCCAAGATCACTGAGCCAGGAAACACTTGGTGAACACCCGAAAACTCAGTATCAACTGCCTTTATTGAAAACCAGTAGCAGCAAGGTGGATTCTCACAGAGTAAAAGTCACATATGGAGATGAGAAAACCCGGTTTCGGATGCTGAAAAATTGGGTCTATGAAGATCTTCTGCAGGAAATTGGTAGGAAATTTAATGTGAGTGACATGAGCAAATTTGATGTCAAATACTTGGATGATGATTGTGAGTGGATACTACTCACTTGTGATGCTGATTTAGAGGAGTGCATTGATGTTTGTCAATCTTCCGAGAGTGGTACCATCAAACTTAGTCTACAACCTTCTAGTCATAGTGTGAGAAGTTCTTTAGAATTTAGATAA	2730	0.4348	MMGDGGVISSAATMMEAPPPDGTTTTSMDFDYMGELFLDGCWMEASADGSDFLLQSPSFSNTLFDPSFSWPALETNHNESQVAAFGSQQESHNNNMVSVVAGGDYSQQFQSETHSVEGASEGIRRWWFAPTHTPTPSPGPGPSIMEKLIRALMWIKDYNRNKDMLIQIWVPVHKEGRPILAADDLLFSLESKSLNLAKYREISVTYKFSAEESDSKELAWGLPGRVFRDKVPEWTPDVRFFKIDEYPRVDHAQEYDVRGTLAVPIFEQGSKTCLGVIEVVMTTQQINYGPELESVCKALEAVDLRSSKQLSIQNVKACNRSYEAALPEIHEVLRSACEMHKLPLAQTWVPCVQQGKEGCRHSEDNYLLCISPVEHACYVGDPSIRSFHEACTEHHLLKGEGVAGGAFMTNQPCFSDDITSLSKKDYPMSHHARLFGLRAAVAIRLRSIYNSTDDFVLEFFLPVDCNDIEEQRKMLTSLSNIIQRVCRSLRVIREKELEEANLSVNEVIALADSGFTRDEICSEPQQKGMVASLDTEEKSSETMGRKFSEPRQQQESPILKGNLDCVRECSTSVEGNLSSPGTSKTGERRRVKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQINSFYSNFPDLASPNLSGTGFFSTLNQSDNPNSTSTQPEHGSLSPEGASKSPSSSSSQSSISSHSCSSMSELQQQHTTNIASDKDPATVGEYSADVVLKLIRNEAKLKSLSQDRAKLLPRSLSQETLGEHPKTQYQLPLLKTSSSKVDSHRVKVTYGDEKTRFRMLKNWVYEDLLQEIGRKFNVSDMSKFDVKYLDDDCEWILLTCDADLEECIDVCQSSESGTIKLSLQPSSHSVRSSLEFR*	910

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso6g0143	909	CDD	PB1_NLP	816	897	IPR034891	-
	Gso6g0143	909	Gene3D	-	813	898	-	-
	Gso6g0143	909	Gene3D	-	172	302	IPR029016	-
	Gso6g0143	909	ProSiteProfiles	PB1 domain profile.	815	898	IPR000270	GO:0005515
	Gso6g0143	909	SMART	PB1_new	815	898	IPR000270	GO:0005515
	Gso6g0143	909	PANTHER	PROTEIN NLP4	25	905	-	-
	Gso6g0143	909	MobiDBLite	consensus disorder prediction	1	23	-	-
	Gso6g0143	909	ProSiteProfiles	RWP-RK domain profile.	581	664	IPR003035	-
	Gso6g0143	909	Pfam	PB1 domain	816	897	IPR000270	GO:0005515
	Gso6g0143	909	SUPERFAMILY	CAD & PB1 domains	815	900	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso6g0143	Gso-Chr6	1348781	1353467	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso6g0143	28	900	NLP Transcription Factor Family	AT1G20640	48.832	0.0	751

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	RWP-RK	Gso6g0143		PB1	9.3e-18	CL0072

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso6g0143	-		-	gmx:100785135	1768.44

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