Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0141 ATGCTCATGGGAAACTGTTTCAGAAAGACCACCAATAATCCACGCCCTTCTCCCCCAGTATCTGCGACCAGAAACTTCAGACCAGACACGAATCTTATAAATTACACGTTGGATGAGTTGAAAAGTGCGACCAGAAACTTCAGACCAGACACGGTCCTAGGCGAGGGTGGTTTTGGACGTGTTTTCAAAGGGTGGATTGATAAGAACACCTTCAAGCCCTCAAGAGTTGGTGTTGGAATCCCCGTGGCTGTGAAGAAGTCTAACCCCGATAGCCTCCAGGGTCTACAAGAATGGCAGAGTGAAGTGCAATTTTTGGGGAAATTCTCTCATCCAAACCTGGTTAAACTTATTGGCTACTGTTGGGAGGAAAATCACTTCCTACTCGTATACGAATACATGCAAAAGGGAAGCCTTGAAAGCCACCTCTTCAGAAGTGGCCCAGAACCTCTTTCATGGGATATAAGACTCAAGATAGCCATAGGAGCCGCCAGAGGTCTAGCTTTCTTGCACACATCAGAAGAGTCTGTCATCTATAGAGACTTCAAGTCCTCTAACATTTTGCTTGATGGGGATTTTAATGCGAAACTATCAGACTTTGGGTTGGCAAAGTTTGGCCCCGTCAATGGAATATCTCACGTAACCACGCGGGTTATGGGCACCTATGGTTACGCAGCCCCAGAATACATGGCTACAGGTCATCTCTATGTTAAAAGTGATGTATATGGATTTGGCGTTGTTCTGCTAGAAATGCTAACAGGTAGGGCAGCTCTAGACACAAATCAGCCCGCGGGTATGCAGAATTTGGTGGAGTGCACTATGTCATGTCTACATGACAAAAAGAGACTGAAAGAGATAATAGACCCAAGGATGAACGAGCAATATTCATTAAGGGCTGCATTTCAAATAGCTCAACTTGTTTTAAAATGTTTAGAAACTGACCCAAAGAAACGACCGTCTACAAAAGAGGTTTTGGGAACCCTAGAAAAAGCTCGAGCCATAAAATACAAACCCAAAGGAAAGAAAGTCTGTCAAACAAGTCAGCGTCGGTCACCATCGATTCATTACAACAATGGCTACCCCAAATCACGAACTAATTCTCCTCCACAATAA 1110 0.4432 MLMGNCFRKTTNNPRPSPPVSATRNFRPDTNLINYTLDELKSATRNFRPDTVLGEGGFGRVFKGWIDKNTFKPSRVGVGIPVAVKKSNPDSLQGLQEWQSEVQFLGKFSHPNLVKLIGYCWEENHFLLVYEYMQKGSLESHLFRSGPEPLSWDIRLKIAIGAARGLAFLHTSEESVIYRDFKSSNILLDGDFNAKLSDFGLAKFGPVNGISHVTTRVMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGRAALDTNQPAGMQNLVECTMSCLHDKKRLKEIIDPRMNEQYSLRAAFQIAQLVLKCLETDPKKRPSTKEVLGTLEKARAIKYKPKGKKVCQTSQRRSPSIHYNNGYPKSRTNSPPQ* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0141 369 MobiDBLite consensus disorder prediction 1 22 - -
Gso6g0141 369 ProSitePatterns Protein kinases ATP-binding region signature. 53 86 IPR017441 GO:0005524
Gso6g0141 369 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 32 350 - -
Gso6g0141 369 ProSiteProfiles Protein kinase domain profile. 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0141 369 MobiDBLite consensus disorder prediction 344 363 - -
Gso6g0141 369 MobiDBLite consensus disorder prediction 337 369 - -
Gso6g0141 369 CDD STKc_IRAK 53 329 - -
Gso6g0141 369 Gene3D Phosphorylase Kinase; domain 1 31 132 - -
Gso6g0141 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Gso6g0141 369 Gene3D Transferase(Phosphotransferase) domain 1 133 350 - -
Gso6g0141 369 Pfam Protein tyrosine and serine/threonine kinase 51 325 IPR001245 GO:0004672|GO:0006468
Gso6g0141 369 SUPERFAMILY Protein kinase-like (PK-like) 25 328 IPR011009 -
Gso6g0141 369 PANTHER OS01G0588500 PROTEIN-RELATED 32 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0141 Gso-Chr6 1311512 1315106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0141 35 327 Glycoside Hydrolase AT3G07070 48.649 5.06e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso6g0141 Pkinase 4.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0141 - - gmx:100784079 756.518