Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0140 ATGAGTTGCTTTTCGTGCTTTGTTTCTCGTGGGAAAGATGTGAGAAGGGTTGAAATTGACAATGGCTCTCGATCTGCTACTTCTTCTTCTGAGGGGAAGGGGAAGAAGAGTGTGAGTAACAAAGGAACTAGTACGGCAGCGGCTAGTTTTGGTTTTCGCGAACTCGCAGAGGCAACGAGGGGTTTCAAGGAAGTGAACTTACTTGGGGAAGGTGGTTTTGGAAGGGTTTACAAGGGTCGTCTTTCAACGGGAGAGTATGTTGCCGTTAAACAATTGATTCATGATGGTAGGCAAGGTTTTCATGAGTTTGTGACGGAGGTTCTTATGTTGAGCCTGCTGCACGATTCTAATCTTGTCAAGTTAATTGGCTACTGCACTGATGGAGATCAAAGGCTTTTGGTTTACGAGTACATGCCCATGGGTTCACTCGAAGACCATCTTTTTGATCCTCACCCAGACAAAGAACCCCTAAGTTGGAGTACTCGAATGAAGATTGCTGTTGGAGCTGCTCGTGGCCTTGAATATCTCCATTGTAAAGCAGATCCACCTGTTATCTACAGGGACTTGAAATCTGCGAACATCTTGTTAGATAATGAATTCAACCCAAAACTGTCAGATTTTGGGCTTGCTAAACTTGGACCTGTTGGAGACAATACCCATGTTTCAACCAGAGTGATGGGAACATATGGTTACTGTGCACCAGAGTATGCCATGAGCGGCAAATTAACTCTTAAATCTGATATATATAGCTTTGGTGTGCTTTTGTTGGAGTTGATCACTGGACGTAGGGCAATAGATACTAATAGAAGACCAGGAGAGCAAAACTTGGTTTCATGGTCTCGTCAATTTTTCAGTGACCGGAAAAAGTTTGTACAAATGATTGACCCTCTATTACAAGAAAACTTCCCCTTGCGCTGTTTGAATCAGGCAATGGCTATAACCGCTATGTGTATCCAGGAGCAACCGAAATTCCGTCCACTTATTGGTGATATTGTTGTTGCACTGGAATACCTAGCTTCTCATAGTAATCCCTAA 1035 0.4338 MSCFSCFVSRGKDVRRVEIDNGSRSATSSSEGKGKKSVSNKGTSTAAASFGFRELAEATRGFKEVNLLGEGGFGRVYKGRLSTGEYVAVKQLIHDGRQGFHEFVTEVLMLSLLHDSNLVKLIGYCTDGDQRLLVYEYMPMGSLEDHLFDPHPDKEPLSWSTRMKIAVGAARGLEYLHCKADPPVIYRDLKSANILLDNEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVLLLELITGRRAIDTNRRPGEQNLVSWSRQFFSDRKKFVQMIDPLLQENFPLRCLNQAMAITAMCIQEQPKFRPLIGDIVVALEYLASHSNP* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0140 344 Gene3D Phosphorylase Kinase; domain 1 22 137 - -
Gso6g0140 344 ProSitePatterns Protein kinases ATP-binding region signature. 68 90 IPR017441 GO:0005524
Gso6g0140 344 CDD STKc_IRAK 68 336 - -
Gso6g0140 344 ProSiteProfiles Protein kinase domain profile. 62 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0140 344 PIRSF ILK 26 343 - -
Gso6g0140 344 MobiDBLite consensus disorder prediction 21 42 - -
Gso6g0140 344 PANTHER OS07G0668900 PROTEIN 31 342 - -
Gso6g0140 344 MobiDBLite consensus disorder prediction 19 42 - -
Gso6g0140 344 Gene3D Transferase(Phosphotransferase) domain 1 138 343 - -
Gso6g0140 344 SMART serkin_6 62 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0140 344 PANTHER OS07G0668900 PROTEIN 31 342 - -
Gso6g0140 344 Pfam Protein tyrosine and serine/threonine kinase 66 333 IPR001245 GO:0004672|GO:0006468
Gso6g0140 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Gso6g0140 344 SUPERFAMILY Protein kinase-like (PK-like) 43 336 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0140 Gso-Chr6 1299341 1303205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0140 1 340 Glycoside Hydrolase AT3G07070 58.449 2.47e-146 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gso6g0140 PK_Tyr_Ser-Thr 4.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0140 - - gmx:100796595 685.641