Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0134 ATGATGGCTGCGAGCTGGGATGGAGCTAATGACCCTGGCAGCCAGTCAGACGATAGCTTTCATTTTGAGAGGTTGCACATTGAGCCTCTTTATGATGCCTTTGTATGTCCGCTGACGAATCAAGTTATGCGTGATCCTGTTACTTTAGAAAATGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGTAGAGAGAGCGGACGGAAACTGGTATGCCCTTTGACTCTTCATGAACTAAGAAGCACAGAGCTGAATCCAAGTATGGCTTTGCGTAACACCATTGAAGAATGGACTGCCAGGAATGAAGTTGCACAACTTGATATGGCTCACCGGTCATTGAATATGGGGAGTCCAGAAAATGAAACTCTTCAGGCCTTAAAGTATGTCCAGCACATCTGCCGAAGAAGTCGATCGAACAAACACACTGTCCGAAATGCAGGGCTTATCCCAATGATTGTTGACATGCTGAAGAGTAGCAGCCGTAAGGTTCGCTGTAGAGCTCTGGAAACCCTTAGAGTTGTTGTAGAGGAAGATGACGAGAATAAGGAATTGTTGGCTGAAGGGGATACTGTGCGTACTGTAGTAAAATTCCTTTCGCATGAGCTTTCTAAAGAAAGAGAGGAGGCTGTCTCCTTGCTTTACGAGCTCTCAAAATCTGCAACCCTTTGTGAGAAGATTGGTTCTATCAATGGTGCCATTCTTATATTAGTAGGGATGACAAGCAGCAAATCAGAAGATCTTCTCACTGTTGAGAAGGCTGATAAAACATTGGAGAATCTGGAGAAGTGTGAGAGTAATGTGCGGCAGATGGCCGAAAATGGCAGATTACAACCTCTTCTGACCCAGCTTCTTGAAGGTCCACCAGAAACCAAACTCTCCATGGCTACATACCTTGGTGAGCTGGTTTTAAACAATGATGTTAAAGTCCTTGTTGCTGGAACTGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAATCAAGAGAAGCAGCACTGAGGGCACTAAATCAGATATCATCATGTTATCCAAGTGCGAAGATTTTAATAGAGGCTGGAATACTTTCTCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCTTCTTCCAACACGATTAAAAGAGATCTCCGCCACAATTCTTGCCAGTGTTGTAAACTCAGGAGAAGACTTTTATTCCATTCCATTTGGACCTGATCACCAAACTCTGGTCTCAGAGGATATAGTTCGTAATCTACTCCATCTTATAAGTAACACCGGTCCCGCAATAGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTACTAGTTTTCCAACTACAGTTCTGAGTGTAGTGGCTGCTATCAAAAGCTCCGGTGCCACCATCAGTCTAGTTCAGTTCATTGAGGCACCACAGAAAGATCTGCGTGTAGCTTCCATAAAACTTCTTCAGAACTTGTCTCCTCATATGGGTCAGGAACTAGCTGATGCACTACGCGGCTCAGTTGGACAGCTTGGTAGTCTCATTAAAGTCATAGCAGAAAATACAGGAATCACTGAAGAGCAGGCAGCGGCCGTTGGCCTTTTAGCGGATCTTCCTGAAAGGGACTTGGGCCTCACAAGGCAGCTACTAGATGAAGGTGCCTTTGTGATGGTCATATCCAGGGTGATTGCCATCAGGCAGGGAGAGATCCGAGGCACTCGCTTCGTGACACCATTTCTTGAAGGGCTTGTTAAGATTGTTGCAAGGGTTACATATGTCTTGGCAGAAGAGCCTGATGCCATTGCACTCTGCCGTGATCACAATCTTGCCGCTCTCTTTATTGATCTGCTTCAGTCCAATGGACTTGATAATGTACAGATGGTTTCTGCTACAGCTCTGGAGAATTTATCCCAAGAATCGAAAAACTTGACCAGATTACCTGAGATGCCATTGCCGGGTTTTTGTGCTTCTGTGTTTTCATGCTTCAGCAAAAAGCCAGTCATAACTGGATCGTGTAGGCTCCACCGAGGGATATGTTCTTTAAAAGAAACATTTTGTCTCTACGAAGGGCAGGCAGTGCTTAAGTTAGTAGGTCTGCTGGACCACACAAATGTGAATGTGGTTGAGGCAGCACTTGCTGCTTTATCTACTTTAATAGAAGATGGGGTAGATATTGAGCAAGGAGTGGCGATTTTGTGTGAAGCAGAGGGAGTGAAGCCTATACTTGATGTGCTACTTGAGAAAAGAACAGATACTTTGAGGAGGAGGGCAGTTTGGGCAGTGGAGAGATTATTGAGAACAGATGATATAGCCTATGAAGTTTCTGGGGACCAAAATGTGAGTACTGCACTTGTGGATGCTTTCCAGCATGGTGACTATCGAACTCGGCAGACAGCTGAGCGTGCCCTCAAGCATGTTGATAAGATACCAAACTTCTCGGGAATCTTTCCAAACATGGGATGA 2445 0.4454 MMAASWDGANDPGSQSDDSFHFERLHIEPLYDAFVCPLTNQVMRDPVTLENGQTFEREAIEKWFKECRESGRKLVCPLTLHELRSTELNPSMALRNTIEEWTARNEVAQLDMAHRSLNMGSPENETLQALKYVQHICRRSRSNKHTVRNAGLIPMIVDMLKSSSRKVRCRALETLRVVVEEDDENKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSATLCEKIGSINGAILILVGMTSSKSEDLLTVEKADKTLENLEKCESNVRQMAENGRLQPLLTQLLEGPPETKLSMATYLGELVLNNDVKVLVAGTVGSSLINIMKSGNMQSREAALRALNQISSCYPSAKILIEAGILSPLVNDLFAVGPNLLPTRLKEISATILASVVNSGEDFYSIPFGPDHQTLVSEDIVRNLLHLISNTGPAIECKLLQVLVGLTSFPTTVLSVVAAIKSSGATISLVQFIEAPQKDLRVASIKLLQNLSPHMGQELADALRGSVGQLGSLIKVIAENTGITEEQAAAVGLLADLPERDLGLTRQLLDEGAFVMVISRVIAIRQGEIRGTRFVTPFLEGLVKIVARVTYVLAEEPDAIALCRDHNLAALFIDLLQSNGLDNVQMVSATALENLSQESKNLTRLPEMPLPGFCASVFSCFSKKPVITGSCRLHRGICSLKETFCLYEGQAVLKLVGLLDHTNVNVVEAALAALSTLIEDGVDIEQGVAILCEAEGVKPILDVLLEKRTDTLRRRAVWAVERLLRTDDIAYEVSGDQNVSTALVDAFQHGDYRTRQTAERALKHVDKIPNFSGIFPNMG* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0134 814 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Gso6g0134 814 SUPERFAMILY ARM repeat 122 536 IPR016024 -
Gso6g0134 814 CDD RING-Ubox_PUB 34 79 IPR045210 -
Gso6g0134 814 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Gso6g0134 814 SUPERFAMILY ARM repeat 454 802 IPR016024 -
Gso6g0134 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 109 IPR013083 -
Gso6g0134 814 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Gso6g0134 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 812 - -
Gso6g0134 814 SMART arm_5 182 222 IPR000225 GO:0005515
Gso6g0134 814 SMART arm_5 673 714 IPR000225 GO:0005515
Gso6g0134 814 SMART arm_5 140 180 IPR000225 GO:0005515
Gso6g0134 814 SMART arm_5 267 307 IPR000225 GO:0005515
Gso6g0134 814 SMART arm_5 591 632 IPR000225 GO:0005515
Gso6g0134 814 SMART arm_5 308 347 IPR000225 GO:0005515
Gso6g0134 814 SMART arm_5 718 760 IPR000225 GO:0005515
Gso6g0134 814 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 2 812 - -
Gso6g0134 814 Coils Coil 257 277 - -
Gso6g0134 814 Gene3D - 310 487 IPR011989 -
Gso6g0134 814 Gene3D - 110 309 IPR011989 -
Gso6g0134 814 Gene3D - 573 804 IPR011989 -
Gso6g0134 814 SUPERFAMILY RING/U-box 24 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0134 Gso-Chr6 1231860 1236472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0134 3 814 U-box Gene Family AT1G76390 65.479 0.0 1041
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0134 - - gmx:100789746 1568.9