Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0121 ATGACTCGTGCCTTGAGATATTTAGGCGAGCGAAACTCGGCCACGGACTCCGCCGTCGTCGATTCCGACTTCGTCGTCATCTTCGCCGCCCTCCTCTGCGCTCTCATCTGCATCCTCGGCCTCGTCGCCGTCACCCGCTGCGGCTGTCTCCGCCGCCTCCGCCTCTCCTCCTCCAACGCTACTCCCCAGCCTCCTCCCGCCTCCGCCAACAAAGGCGTCAAGAAGAAGGTCCTCCGCTCCCTCCCCAAGGTCACCGCCTCCGCCGAATCCGCTGTCAAGTTCGCCGACTGCGCGATCTGCCTCACCGAGTTCGCAGCCGGAGACGAAATCCGAGTGCTTCCTCAGTGCGGACATGGCTTCCACGTCAGCTGCATCGACGCCTGGCTCAGATCGCATTCCTCCTGTCCATCCTGCCGTCAGATTCTGGTGGTTTCTCGCTGCGACAAGTGCGGCGGGATCCCGGCTCCGGCGAGTTCCAGCTCGGCGCCACCGCTGGCGGACTCGGGGGACAGATTGAAGGGAAGGGAGGAGGACGCGAATAGATTCTTGCCTTAG 555 0.636 MTRALRYLGERNSATDSAVVDSDFVVIFAALLCALICILGLVAVTRCGCLRRLRLSSSNATPQPPPASANKGVKKKVLRSLPKVTASAESAVKFADCAICLTEFAAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVSRCDKCGGIPAPASSSSAPPLADSGDRLKGREEDANRFLP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0121 184 MobiDBLite consensus disorder prediction 155 184 - -
Gso6g0121 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 143 IPR013083 -
Gso6g0121 184 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 176 - -
Gso6g0121 184 SUPERFAMILY RING/U-box 78 144 - -
Gso6g0121 184 CDD RING-H2_PA-TM-RING 96 139 - -
Gso6g0121 184 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Gso6g0121 184 PANTHER RING-H2 FINGER PROTEIN ATL8 1 176 - -
Gso6g0121 184 Pfam Ring finger domain 96 139 IPR001841 -
Gso6g0121 184 SMART ring_2 97 138 IPR001841 -
Gso6g0121 184 MobiDBLite consensus disorder prediction 169 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0121 Gso-Chr6 1151955 1152847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0121 1 184 C3H Transcription Factor Family AT1G20823 59.596 2.10e-66 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0121 - - gmx:100812940 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0133 4 1170339 1171300 Gso6g0121 6 1151955 1152847 GST