Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0118 ATGTTGGCAATGGAAGAACTACTGTGTGAACTTAGTGATCATGAAAGGAGAAACGAGCAAGGTCTGCCACCGGGTTTCAGGTTTCACCCCACTGATGAAGAACTTGTAACCTTTTACTTGGCTTCAAAGGTCTTTAATGGCACCTTCTCTAACGTCAAGTTTGCTGAGGTTGACCTCAATAGATGTGAGCCTTGGGAACTTCCAGATGTGGCAAAGATGGGGGAGAGAGAGTGGTATCTGTTCAGCTTGAGGGACAGAAAATACCCAACTGGGCTAAGAACAAACAGAGCAACCGGAGCTGGGTACTGGAAAGCCACTGGGAAGGACAAGGAAGTGTACAGTGCATCCAGTGGAACCCTACTTGGAATGAAGAAGACCCTTGTTTTCTACAAAGGCAGGGCCCCTCGTGGTGAAAAGACCAAATGGGTCATGCACGAGTACCGTTTGGTTTTGGATGCTCACTTTTCCCTTCCCCACACTCACCCCTCTAAGGAGGAGTGGGTTATATGCAGGATATTTCATAAATCTGGGGAAAAGAGAAGTCCAGTGCTCCAAGTCCATGGACATTCAGATGCTTCTTCGTCCCCAAGAGAAAGTGCTTTACCTCCATTACTTGCAAGCCCAAGTTGCTTTACATTTGATCCAGAATCTCAATCCCAAAGTTCATCTCATTCTCAGCGAGACTTCCAAAGCCCGGTTCTGATTCACCACCAAGACCAAAATGGCCACTCTCATAACCCTCGTCTTTTCCCATTAGAAATCACCAACGCCAGAAACCACCCATCATCATTTTCGGACCTATTCTTCAAGCCCCTCCAGCAGAATTGCACCCTGAAGACCAACGAACAAACTATTCTTCCAAAAGTAACCAAAACGGAGGACGCTACATTCTATGATCAATATCATCAATTACTAGATGACCATAATAACATGCACTGGGTGAACAAGTTGAATCAAAATCCAAGCAATTTACTCAACACTTTCCCTTTTGAGGTGGATGCTGGCTTGATGGCATTCTCAGGAGCTGCAAATGCTCAAGTTAGGGACATATCCACTTCAACACCCTTTAATAGGGTAGGCTTGCAGCAGACGCTAGATTCTTGGCCTCTGGCCCAGCATGTTTGA 1125 0.4596 MLAMEELLCELSDHERRNEQGLPPGFRFHPTDEELVTFYLASKVFNGTFSNVKFAEVDLNRCEPWELPDVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSASSGTLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLVLDAHFSLPHTHPSKEEWVICRIFHKSGEKRSPVLQVHGHSDASSSPRESALPPLLASPSCFTFDPESQSQSSSHSQRDFQSPVLIHHQDQNGHSHNPRLFPLEITNARNHPSSFSDLFFKPLQQNCTLKTNEQTILPKVTKTEDATFYDQYHQLLDDHNNMHWVNKLNQNPSNLLNTFPFEVDAGLMAFSGAANAQVRDISTSTPFNRVGLQQTLDSWPLAQHV* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0118 374 Gene3D NAC domain 31 179 IPR036093 GO:0003677|GO:0006355
Gso6g0118 374 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 316 - -
Gso6g0118 374 ProSiteProfiles NAC domain profile. 22 175 IPR003441 GO:0003677|GO:0006355
Gso6g0118 374 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3 12 316 - -
Gso6g0118 374 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
Gso6g0118 374 SUPERFAMILY NAC domain 17 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0118 Gso-Chr6 1125866 1128443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0118 1 213 NAC Transcription Factor Family AT1G76420 64.840 2.69e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso6g0118 NAM 6.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0118 - - gmx:100780313 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0130 4 1140251 1142989 Gso6g0118 6 1125866 1128443 GST