Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0115 ATGTCCGGATCTGACATGGCAGGGAGGGAGCAATTCACGGTTGGGATGCACAAACCCCAACAACAACAACAACAACAACAACAACCTCAGCTTCATCAAAACATGCGTATGGACTATGCTGCTGACGGCACTGCTGTTTTCGCCCCTCCGACCGTTACCGTTAACATTAACGGCGGAGATTCCTCTCCAGCGGTGCCTCCGGGCCTGGGCCTGCCCCAGCCCCAGCCCATGATGGTTAACTCCCCCGAACCAATTAAGAGAAAGAGGGGAAGGCCCAGGAAATATGGGCCTGACGGTGGCATGACCTTGGGGGCTTTGAAGACCACCACTCCTCCCGGCGGCGGCGTGCCGGTTGGGCAGTCCGGTGGGGCATTTCCAGCGGGGCCTCTTTCGGATTCGGCCTCAGCTGGTACCGTGAAGCGCAGGGGCAGACCTCGTGGTTCTGTCAACAAAAATAAGAAGAATGATAGCTCTAACTCCTCTAAGTATTCTGGGCCAGGATCTTGGTTTACTCCGCATGTCATTACGGTGAACGCTGGAGAGGATTTGTCAGCAAGAATTATGACAATTTCCCAGAGTAGTTCAAGAAATATTTGCATCTTAACAGCAAATGGAGCCATATCTAATGTGACACTTCGACAACCTGCCTCATCTGGTGGAACTGTGACTTATGAGGGGCGATTTGAGATCCTATCACTTGGAGGTTCTTTTTTTCTTGCTGGAACTGAAAGAGCTGGGGGGCTGAGTGTGTCCTTGTCAGGGCCAGATGGCCGTGTGTTGGGCGGCGGAGTTGCAGGTCTTCTGATAGCTGCTTCCCCTGTTCAGATTGTTTTGGCGAGCTTTGTTTCTGATGTTCGCAAGCACTTGAAGCGTGCAAAGAAGACGGAGAATGAAAAGGTTTCGACAGCAGGAGGCCAAAGCAGCTCACCATCAAGAGGCACTCTCAGCGAGTCCTCAGGTGGGGTTGGGAGTGGGAGCCCACTAAACCAAAGCACAGGAGCATGCAACAACACCATCGAAAACAGTACCACCCCAACACAAAGCTTTCAAGGCATGCCCTGGAAGTAG 1068 0.5272 MSGSDMAGREQFTVGMHKPQQQQQQQQQPQLHQNMRMDYAADGTAVFAPPTVTVNINGGDSSPAVPPGLGLPQPQPMMVNSPEPIKRKRGRPRKYGPDGGMTLGALKTTTPPGGGVPVGQSGGAFPAGPLSDSASAGTVKRRGRPRGSVNKNKKNDSSNSSKYSGPGSWFTPHVITVNAGEDLSARIMTISQSSSRNICILTANGAISNVTLRQPASSGGTVTYEGRFEILSLGGSFFLAGTERAGGLSVSLSGPDGRVLGGGVAGLLIAASPVQIVLASFVSDVRKHLKRAKKTENEKVSTAGGQSSSPSRGTLSESSGGVGSGSPLNQSTGACNNTIENSTTPTQSFQGMPWK* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0115 355 MobiDBLite consensus disorder prediction 1 35 - -
Gso6g0115 355 MobiDBLite consensus disorder prediction 291 355 - -
Gso6g0115 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 7 338 - -
Gso6g0115 355 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Gso6g0115 355 SMART AT_hook_2 139 151 IPR017956 GO:0003677
Gso6g0115 355 MobiDBLite consensus disorder prediction 152 166 - -
Gso6g0115 355 CDD DUF296 171 281 IPR005175 -
Gso6g0115 355 Gene3D - 172 302 - -
Gso6g0115 355 MobiDBLite consensus disorder prediction 299 355 - -
Gso6g0115 355 MobiDBLite consensus disorder prediction 15 34 - -
Gso6g0115 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 7 338 IPR039605 GO:0003680
Gso6g0115 355 MobiDBLite consensus disorder prediction 51 166 - -
Gso6g0115 355 ProSiteProfiles PPC domain profile profile. 164 302 IPR005175 -
Gso6g0115 355 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 286 - -
Gso6g0115 355 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 282 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0115 Gso-Chr6 1107479 1111544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0115 83 355 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 51.034 1.27e-68 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0115 - - gmx:100806173 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0128 4 1124352 1128353 Gso6g0115 6 1107479 1111544 GST