Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0112 ATGGCATACCAAGCGATCCAGGTTCCGAGTTCGGGATCGAGTTCGAGTTCGGGGTTTCAGTTATTGAATTCTCCGTTCGGAGACACCACCTACACCAAAGTCTTCGTCGGAGGATTGGCCTGGGAGACTCAGAGCGAAACCATGCGCCGCTACTTCGACCAGTTCGGCGAGATTCTCGAGGCCGTCGTCATCACCGATAAGAACACCGGAAGATCCAAGGGCTACGGTTTCGTGACTTTCCGGGATCCCGAGGCTGCAAGGAGAGCGTGTGCCGATCCAACTCCTGTTATTGATGGCAGAAGGGCCAATTGTAATTTGGCTTCACTTGGTCGACCACGGCCCCCTCTGCCTTATGGACGGATAAGACCTGCCTCCCCTTATGTTGGAAGTTTGCAACCAGCTCGTGGTGCTTATGTTGGGGGTTTTGGCTACCAGCAACAACCAGTTTCCTACAGCTATCAACAAGGATTGGTTTACCCTCCTTACGGGTATACGACATATGGACCTGAGTACATCTACCCACAGAGTCTGTACAACCCATATATGGGGCAACAGTATCTTCAGATATATGGAGTGCCTGGGGCAGTGAATACAACTGTTTATCCTTATGGACAAGTGGGTCAGGCTATTCCTAGTGGTCATGGTTATTCAGCTATACAGGGTTATACAGTACCAGGTCATCAGATTGTGCCCTATGGTGGATCTAATGTTAATGCCATAACAACTTCACCTATGCCTGCCATTCAAGCTTCATATCCTAGTGGAATTGCTGCACCAGTTCCTGGCCAACCACAATTTATTGTTCCTGCTCATTCTCCTCAGTTTATGCAAGGTAGCGGTCCTGATCAAACAGCTGGGTGA 861 0.4971 MAYQAIQVPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFDQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPYGRIRPASPYVGSLQPARGAYVGGFGYQQQPVSYSYQQGLVYPPYGYTTYGPEYIYPQSLYNPYMGQQYLQIYGVPGAVNTTVYPYGQVGQAIPSGHGYSAIQGYTVPGHQIVPYGGSNVNAITTSPMPAIQASYPSGIAAPVPGQPQFIVPAHSPQFMQGSGPDQTAG* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0112 286 SUPERFAMILY RNA-binding domain, RBD 7 121 IPR035979 GO:0003676
Gso6g0112 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Gso6g0112 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Gso6g0112 286 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 1 282 - -
Gso6g0112 286 CDD RRM_RBM24_RBM38_like 32 107 - -
Gso6g0112 286 PANTHER BOULE-RELATED 1 282 IPR037366 GO:0003729
Gso6g0112 286 Gene3D - 4 116 IPR012677 -
Gso6g0112 286 SMART rrm1_1 33 105 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0112 Gso-Chr6 1086647 1091592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0112 21 165 C2H2 Transcription Factor Family AT2G19380 32.692 1.05e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0112 - - gmx:100779244 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0125 4 1107026 1111878 Gso6g0112 6 1086647 1091592 GST