Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0109 ATGGAGGATGGTGAGAAACCCAGCCATGGCATTGCTGATATGGATGTTGTTGATGCCACTTTGCAAAGCCATCGTGTGGCTTCTGATCAAGTAATGGTCCTACAGGGTCATGATATCAAAAACGGCGATTCTGATCCTGCTCACGTGCCAGCAACCAGTGCAATTAGCAATAATCAGTTTGAACTTGAAGATGCTAAGACTGTTTCGCATCAGGAACTGATCACTCCAAAGCCTAAAGAAAAGAATGTCAGAGAAATGAAGAATGTGCTAAATGATACCGAGATGACTGATTATGATGAGTATGGCACGCCTCTGGATCGAGAAACATTTATGAAAGAGCTTGAGACTTTCTACAGAGAGCGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGAGCCACTCAATTGTCTTAAGTTGTGGAGAGCTGTTATCAGACTAGGCGGCTATGATGTGGTAACTGGATCCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCCCCAAAGACCTGCACTACAGTCTCATGGACATTTAGAATTTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCACAAGAGAGAGATTGGGGAGCTACAGCTCCCTGTTGGACCATTCCATCAATCTTCAAATGTGGAAAAAGAGCCTGCTGTTTACCAGACTCCAGGCTCAGGTAGAGCAAGAAGGGATGCAGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATACGGTGAGGTTGCTGAGCCAGTTATTAAGGACAAGAACTTCAGTTCCACGCCAAAGCGTGAAAAGAACCTAAAAAGTATTGGTATGAATAATAAACAGAGGACACTGTCTGGTCTGGAGCATGCTGAAAAATCTGCAAATATTGAAGGAGATCGGCAATTGGTCACAGCAGTAGTGGATGTTGGACCCCCAGCTGACTGGGTGAAGATCAATGTGCGTGAAAGTAAGGATTGTTTTGAGGTATATGCCCTAGTTCCTGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCAGATCCAGTTGGACGTCTTGTTATAACTGGTGTGCCAGAACATATAGACAATCCATGGGGAATTACCCCCTTCAAAAAGGTTGTGAACTTACCTGCAAGAATTGATTCGCTTCAGACATCTGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGCGTTCCTTTTGAGCAGGGAGCTGTGTGA 1215 0.4519 MEDGEKPSHGIADMDVVDATLQSHRVASDQVMVLQGHDIKNGDSDPAHVPATSAISNNQFELEDAKTVSHQELITPKPKEKNVREMKNVLNDTEMTDYDEYGTPLDRETFMKELETFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGPFHQSSNVEKEPAVYQTPGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNFSSTPKREKNLKSIGMNNKQRTLSGLEHAEKSANIEGDRQLVTAVVDVGPPADWVKINVRESKDCFEVYALVPGLLREEVRVQSDPVGRLVITGVPEHIDNPWGITPFKKVVNLPARIDSLQTSAVVSLHGRLFVRVPFEQGAV* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0109 404 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 303 404 IPR002068 -
Gso6g0109 404 Pfam ARID/BRIGHT DNA binding domain 107 191 IPR001606 GO:0003677
Gso6g0109 404 SUPERFAMILY ARID-like 92 202 IPR036431 GO:0003677
Gso6g0109 404 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 49 401 - -
Gso6g0109 404 SUPERFAMILY HSP20-like chaperones 312 399 IPR008978 -
Gso6g0109 404 CDD ARID 106 191 - -
Gso6g0109 404 CDD ACD_sHsps_p23-like 319 398 - -
Gso6g0109 404 Gene3D - 105 202 IPR036431 GO:0003677
Gso6g0109 404 Gene3D - 300 403 IPR008978 -
Gso6g0109 404 ProSiteProfiles ARID domain profile. 104 195 IPR001606 GO:0003677
Gso6g0109 404 SMART bright_3 105 196 IPR001606 GO:0003677
Gso6g0109 404 SMART ARID_2 101 191 - -
Gso6g0109 404 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 49 401 IPR045147 GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0109 Gso-Chr6 1063649 1071874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0109 12 401 ARID Transcription Factor Family AT1G76510 61.637 5.49e-160 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso6g0109 ARID 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0109 - - gmx:100797486 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0123 4 1081872 1090781 Gso6g0109 6 1063649 1071874 GST