Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0107 ATGGAGAAGGAGCATAAAGCTGCTCAGTTGACCATCTTCTACAATGGGCAAGTTGTTGTGTTTGATGATTTTCCAGCTGATAAAGTGCAGGAGATGATGTCTTTGGCATTGGCCACCAAGGGAATATCCCAAAGCCAGAACTCCTCTGCATATGCTCACACTCATAACCAGCAAGGAAATAATCATCCTTCGACTATTCCTAATATCATCCCTCAAGCACCATCCACACCAATTGCTAATGACATGCCAATTGGTAGGAAAGCTTCCCTTCATCGGTTCCTTGAGAAGAGGAAAGATAGAATTGCTGCCAAAGCACCATATCAAACAAACAGACCTATCTCTGCTCCTAATAAGCCGGCTGAATCATTAGATGCTAAATCACACACCTGA 390 0.4333 MEKEHKAAQLTIFYNGQVVVFDDFPADKVQEMMSLALATKGISQSQNSSAYAHTHNQQGNNHPSTIPNIIPQAPSTPIANDMPIGRKASLHRFLEKRKDRIAAKAPYQTNRPISAPNKPAESLDAKSHT* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0107 129 MobiDBLite consensus disorder prediction 88 104 - -
Gso6g0107 129 PANTHER PROTEIN TIFY 10A 4 121 - -
Gso6g0107 129 Pfam tify domain 6 36 IPR010399 -
Gso6g0107 129 SMART tify_2 3 38 IPR010399 -
Gso6g0107 129 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 4 121 IPR040390 -
Gso6g0107 129 MobiDBLite consensus disorder prediction 43 75 - -
Gso6g0107 129 ProSiteProfiles Tify domain profile. 3 38 IPR010399 -
Gso6g0107 129 MobiDBLite consensus disorder prediction 43 129 - -
Gso6g0107 129 Pfam Jas motif 83 108 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0107 Gso-Chr6 1031349 1032098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0107 4 119 Tify Gene Family AT1G19180 45.082 4.49e-24 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gso6g0107 tify 1.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0107 K13464 - gmx:100778169 261.922