Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0098 ATGGCGCCACCCGCCACCTCCACCGGCGGTACGCTGCCGGAGCTAACTAACCGAACCCCCTTTCTCGGCCTCAAACTCTACGTCCTACTCCTAATTGCAGTTCTAATCGTGATCGCAACGGTGATCCTGATCCTCGTGTGCGTTCGCCGGAGCCGGAGCTCGAAGAAGCGGAAAATGCGAGTGAAGCACAGCTCCGGCGCGATCCCTCTGGTGTCGAAGGAGATCGTGGAGGTGAATACTCTGGAGCTGAAAATCGATGAGGAGGTGGAGATTGAGATTGAAGAGAGTGCGTCGGCGGAGTCGCCGAACATAGGGTGGGGACGATGGTATAGTCTCAAGGAGCTTGAGAATGCGACTGAAGGGTTTGCGGAAGTGAATGTGATCGGAGAAGGAGGCTATGGGATTGTCTACAAAGGAATTCTCATGGATGGATCTGTCGTCGCTGTCAAAAATCTTCTCAACAACAAGGGCCAGGCAGAGAAAGAGTTTAAAGTGGAGGTTGAAGCCATTGGAAAAGTGAAACATAAGAATTTGGTGGGGTTAGTTGGATATTGCGCAGAAGGTGCTCAAAGGATGCTTGTTTATGAATATGTTGACAATGGAACATTGGAACAGTGGCTTCATGGTGATGTAGGACCTGTTAGCCCCTTGCCATGGGATATAAGAATGAAGATTGCTGTTGGGACTGCAAAAGGGCTAGCCTACTTGCACGAAGGATTAGAACCCAAAGTGGTCCACCGAGATGTAAAATCCAGTAACATTCTTTTGGACAAAAAGTGGAATGCTAAAGTATCAGACTTTGGACTAGCCAAGCTCTTAGGGTCTGAGAAAAGCTACGTGACAACCCGTGTAATGGGGACATTTGGATATGTTTCACCTGAGTATGCAAGCACTGGTATGCTTAATGAGGGAAGCGATGTGTATAGTTTTGGGATTCTACTGATGGAGCTAATTACAGGAAGGAGTCCCATTGATTATTCTAGACCACCTGGAGAGATGAACTTGGTTGATTGGTTTAAGGTAATGGTTGCAAGTCGTCGAGGCGATGAGCTAGTTGATCCTTTAATTGATATTCAGCCCTATCCAAGATCTTTGAAGCGAGCTTTACTGGTTTGTCTTCGCTGTATAGACTTGGATGTCAATAAGCGACCGAAGATGGGTCAAATTGTTCATATGCTTGAGGCTGATGATTTTCCCTTCCGTTCTGAGCATAGAACAAATCGAGAGAAAGATCCTGTTCATTCTAAAGCAGCTGTTTCCAGTAAGATTCTATACCCAACAAGGCATGTGGAGCCCGCAGATAAATCAAGCTGGAGATGA 1320 0.4697 MAPPATSTGGTLPELTNRTPFLGLKLYVLLLIAVLIVIATVILILVCVRRSRSSKKRKMRVKHSSGAIPLVSKEIVEVNTLELKIDEEVEIEIEESASAESPNIGWGRWYSLKELENATEGFAEVNVIGEGGYGIVYKGILMDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVKHKNLVGLVGYCAEGAQRMLVYEYVDNGTLEQWLHGDVGPVSPLPWDIRMKIAVGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKKWNAKVSDFGLAKLLGSEKSYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGILLMELITGRSPIDYSRPPGEMNLVDWFKVMVASRRGDELVDPLIDIQPYPRSLKRALLVCLRCIDLDVNKRPKMGQIVHMLEADDFPFRSEHRTNREKDPVHSKAAVSSKILYPTRHVEPADKSSWR* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0098 439 CDD STKc_IRAK 128 394 - -
Gso6g0098 439 Gene3D Transferase(Phosphotransferase) domain 1 198 416 - -
Gso6g0098 439 SUPERFAMILY Protein kinase-like (PK-like) 103 394 IPR011009 -
Gso6g0098 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Gso6g0098 439 Gene3D Phosphorylase Kinase; domain 1 83 197 - -
Gso6g0098 439 SMART serkin_6 122 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0098 439 MobiDBLite consensus disorder prediction 403 439 - -
Gso6g0098 439 PANTHER OS03G0227900 PROTEIN 98 410 - -
Gso6g0098 439 PANTHER OS03G0227900 PROTEIN 15 96 - -
Gso6g0098 439 ProSiteProfiles Protein kinase domain profile. 122 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0098 439 PANTHER OS01G0323000 PROTEIN 15 96 - -
Gso6g0098 439 PANTHER OS01G0323000 PROTEIN 98 410 - -
Gso6g0098 439 ProSitePatterns Protein kinases ATP-binding region signature. 128 150 IPR017441 GO:0005524
Gso6g0098 439 Pfam Protein kinase domain 123 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0098 Gso-Chr6 967912 971104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0098 13 389 Trihelix Transcription Factor Family AT1G68690 41.753 5.83e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gso6g0098 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0098 - - gmx:100779420 803.897