Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0097 ATGGGCATAGTGTGGCTTGGGTTGTTGTTGCTGGTGCTGAGTCAGGTGACATTGGAGCAGAATGAGCCACTGAGTTCCGTCGAGGAGCGAGAATCGTTGCTCGAACTAAGGGGTTCTCTGGGGTTGAGGAGCAAGGAGTGGCCAAGAAAGCCAGACCCATGTTTAATCTGGGTTGGCATCACGTGCCAGAATGGTCGTGTCGTTGGGATCAATATCTCTGGCTTCAGAAGAACCAGACTTGGGAGGAGGAACCCGCAATTTGCAGTGGATGCTTTGGCCAATTTCACCCTCTTGCGGTCCTTCAATGCCTCCAATTTCCCCCTTCCTGGCTCTATTCCTGATTGGTTTGGTCTCTCTCTCCCTTCACTCACTGTGCTTGATCTTCGTTCTTGCTCCATTGTTGATGCTATTCCCTCCACTCTTGGCAATTTAACCAACCTCACTAGTCTCTATCTCTCTGACAACAACCTCATTGGGAATGTTCCTGGGACTTTGGGTCAACTCTTGGCCCTTTCGGTTCTTGATCTTTCCAGGAATTCTCTTACTGGCTCCATACCAGCCTCTTTCGCCTTTCTTGGGAATCTTTCCTCCCTTGACATGTCTGCTAATTTTTTGTCGGGGGCGATTCCCACCGGCATAGGGACTCTTTCCAGGCTGCAGTACTTGAATCTTTCCAACAATGGCCTTTCTTCTTTGCCTGCCGAATTGGGGGGCCTTGCTAGCTTAGTTGACCTTGATCTTAGTGAGAATTCTTTCGTTGGTGGTGGATTGCCTCCTGATTTCACCCGATTGAGGAACTTGAGGAGGATGATACTTGCCAACAGCATGCTCACTGGAGCTCTGCCGGGGAGATTGTTTAGTGATTCGTTGCAGTTCCTAGTGCTGAGGCAAAACAACTTTAGTGGTTCTCTGCCTGTTGAGTTGTGGTCTCTGCCAAGATTGAGCTTCCTCGATGTCTCTGCCAATAACTTCAGTGGTCTGCTTCCTAATTCGACTTCTGCTGCTAATAATGCTACTGCTGCGGTGCTCAATATTTCGCATAATAAGTTTTATGGAGGCCTCACTCCTGCACTCAGAAGGTTTGGTTTCGTTGATCTTTCCAGCAATTATTTTGAAGGCAAGATTCTGGATTACATGCTTAATGTATCTCTAGATATCAACTGCCTCCAGAAAGCGACAAATCAGAGGTCAACGATGGAATGTGCATCATTTTATGCGGAGAGGGGGCTCAGTTTTGATAATTTTGGACAGCCAAATACGACAAAACCTCCCACAGCCGAAAGCTCTGGGAAGAGCAATAAAACTAAGATTATATTGGCAGCAGTCTTTGGTGGAGTGGGTTTAATTGCACTTTTGGTGCTGCTACTGGTTCTGTTGCTTCTGTGTGCTCGTAAGAGGGGTAATTCAAATCAGAGAGGGAATGGTGTGGGTCCTGCTCCTGTTGGCAGCAGTCCTCCAAATCCCGGTGTACTGGTCGACTTTCCAAATGTCGGAGACTCATTTACCTATCATCAGTTGCTCCAGGCAACAGGAGATTTCAATGATGCAAATCTTATCAAACATGGCCACACTGGGGATTTCTTCAATGGTGTTTTGGAAAGTGGGATTCCTGTCGTCATCAAAAGGATTGACATGCGTTCAACTAAAAAGGAGGCTTACCTGTCGGAATTGGACTTCTTTAATAAGGTTTCTCATCAAAGATTTGTTCCTTTGTTAGGTCATTGCTTAGAAAATGAGAATGAGAAGTTCCTGGTTTATAAACGCATGACAAATGGGGACTTGTCTAATTGCTTGTACTACAAAAACACATCTGAAGATGGTACTTTGCAATCATTAGACTGGATAACTAGGTTAAAAATTGCTACTGGAGCAGCAGAGGCACTATCATATCTACATCATGAATGTGTTCCGCCGATTGTTCACAGAGATATTCAAGCAAGCAGTATACTTCTAGACGATAAATATGAAGTTCGGTTAGGGAGCCTAAGTGAATCCTGTGCTCAAGAAGGTGATATTCATCAAAGTAAAATCACCCGGTTTCTGCGGTTGCCTCAGTCTTCTGAACAAGGCACATCTGGTTCATCAACATCAATTTGTGTCTATGACGTTTATTGTTTTGGAAAAGTTTTACTTGAGCTGGTGACGGGTAAGCTGGGAATGAGTGCAGCCAGTGACACCGAAGTAAAGGAGTGGTTTGATCAGATTCTACCTTGCATTAGTATGTACGATAAGGAGCTTGTGACAAAAATTGTTGATCCGTCAATGGTTGTTGATGAGGATTTCTTAGAGGAAGTATGGGCTATATCCATTGTTGCCAGGTCTTGCCTAAATCCCAAACCTTCAAGAAGACCCCCAATGAGATATGTTCTCAAGGCTTTGGAAAACCCTTTAAAAGTTGTAAGGGAAGAAAATTCCAGTTCTGCACGGCTTAGAGCAACCTCTTCTAGAGGCTCTTGGAATGCTACTTTGTTTGGTAGTTGGCGTCAGAGTTCTTCGGATGTAACACTTACTCCAGCAGCCTCTGGTACAAAACTAGAAAGAGCTAGTAGTTTAAAGCTGTCAGGAACTACTGGCTCGCAGTCACAGGGTAGTTTCCACAATGGAGGTGAGATTTTGTCATCGCGGAGACGACATTCAAAGGAGATATTGCCAGAGCCATCTGGCGTGCATGATGTAGAGAGGTTGGAGCTTGAATAG 2697 0.4516 MGIVWLGLLLLVLSQVTLEQNEPLSSVEERESLLELRGSLGLRSKEWPRKPDPCLIWVGITCQNGRVVGINISGFRRTRLGRRNPQFAVDALANFTLLRSFNASNFPLPGSIPDWFGLSLPSLTVLDLRSCSIVDAIPSTLGNLTNLTSLYLSDNNLIGNVPGTLGQLLALSVLDLSRNSLTGSIPASFAFLGNLSSLDMSANFLSGAIPTGIGTLSRLQYLNLSNNGLSSLPAELGGLASLVDLDLSENSFVGGGLPPDFTRLRNLRRMILANSMLTGALPGRLFSDSLQFLVLRQNNFSGSLPVELWSLPRLSFLDVSANNFSGLLPNSTSAANNATAAVLNISHNKFYGGLTPALRRFGFVDLSSNYFEGKILDYMLNVSLDINCLQKATNQRSTMECASFYAERGLSFDNFGQPNTTKPPTAESSGKSNKTKIILAAVFGGVGLIALLVLLLVLLLLCARKRGNSNQRGNGVGPAPVGSSPPNPGVLVDFPNVGDSFTYHQLLQATGDFNDANLIKHGHTGDFFNGVLESGIPVVIKRIDMRSTKKEAYLSELDFFNKVSHQRFVPLLGHCLENENEKFLVYKRMTNGDLSNCLYYKNTSEDGTLQSLDWITRLKIATGAAEALSYLHHECVPPIVHRDIQASSILLDDKYEVRLGSLSESCAQEGDIHQSKITRFLRLPQSSEQGTSGSSTSICVYDVYCFGKVLLELVTGKLGMSAASDTEVKEWFDQILPCISMYDKELVTKIVDPSMVVDEDFLEEVWAISIVARSCLNPKPSRRPPMRYVLKALENPLKVVREENSSSARLRATSSRGSWNATLFGSWRQSSSDVTLTPAASGTKLERASSLKLSGTTGSQSQGSFHNGGEILSSRRRHSKEILPEPSGVHDVERLELE* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0097 898 Pfam Leucine rich repeat 194 251 IPR001611 GO:0005515
Gso6g0097 898 Pfam Leucine rich repeat 121 181 IPR001611 GO:0005515
Gso6g0097 898 SUPERFAMILY L domain-like 27 377 - -
Gso6g0097 898 Gene3D Ribonuclease Inhibitor 26 187 IPR032675 -
Gso6g0097 898 Gene3D Ribonuclease Inhibitor 188 286 IPR032675 -
Gso6g0097 898 ProSiteProfiles Protein kinase domain profile. 513 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0097 898 PRINTS Leucine-rich repeat signature 171 184 - -
Gso6g0097 898 PRINTS Leucine-rich repeat signature 216 229 - -
Gso6g0097 898 MobiDBLite consensus disorder prediction 871 898 - -
Gso6g0097 898 SUPERFAMILY Protein kinase-like (PK-like) 489 793 IPR011009 -
Gso6g0097 898 Gene3D Transferase(Phosphotransferase) domain 1 589 815 - -
Gso6g0097 898 Gene3D Ribonuclease Inhibitor 287 396 IPR032675 -
Gso6g0097 898 ProSiteProfiles Leucine-rich repeat profile. 218 240 IPR001611 GO:0005515
Gso6g0097 898 MobiDBLite consensus disorder prediction 833 869 - -
Gso6g0097 898 PANTHER BNAA07G03560D PROTEIN 8 183 - -
Gso6g0097 898 PANTHER BNAA07G03560D PROTEIN 181 841 - -
Gso6g0097 898 Pfam Protein tyrosine and serine/threonine kinase 519 789 IPR001245 GO:0004672|GO:0006468
Gso6g0097 898 Gene3D Phosphorylase Kinase; domain 1 491 587 - -
Gso6g0097 898 SMART LRR_typ_2 311 334 IPR003591 -
Gso6g0097 898 SMART LRR_typ_2 168 191 IPR003591 -
Gso6g0097 898 SMART LRR_typ_2 144 167 IPR003591 -
Gso6g0097 898 SMART LRR_typ_2 264 288 IPR003591 -
Gso6g0097 898 SMART LRR_typ_2 216 239 IPR003591 -
Gso6g0097 898 SMART LRR_typ_2 120 143 IPR003591 -
Gso6g0097 898 MobiDBLite consensus disorder prediction 833 898 - -
Gso6g0097 898 PANTHER RECEPTOR-LIKE PROTEIN 55 181 841 - -
Gso6g0097 898 PANTHER RECEPTOR-LIKE PROTEIN 55 8 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0097 Gso-Chr6 956883 962573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0097 25 685 Miscellaneous Gene Families AT2G16250 57.612 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Gso6g0097 PK_Tyr_Ser-Thr 1.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0097 - - gmx:100776587 1637.47