Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0096 ATGGCTTCTGCAGAAGTAGAGTTCCGATGCTTTGTTGGTGGGCTTGCTTGGGCCACCGACCACGATGCTCTCGAGAAAGCCTTCTCTCAATTTGGCGAAATCGTCGAATCGAAGGTCATCAACGATCGTGAAACTGGAAGATCCAGAGGGTTTGGATTTGTGACCTTCGCCACAGAGCAGGCGATGAGAGACGCAATTGAAGGAATGAACGGCCAGAACCTCGACGGTCGTAATATAACCGTGAACGAGGCTCAATCCCGTGGAAAAGGTGGCGGCGGCGGTGGCGGCGGCGGTTACGGAGGAGGTGGTGGTGGTTACGGTGGCGGCGGAGGTTACAGCCGCGGTGGAGGAGGATATGGTGGCGGAGGAGGCCGCCGTGAAGGTGGTTATAACCGCAACGGTGGTGGAGGAGGATATGGTGGCGGTGGCGGCGGATATGGAGGTGGTGGAGGTTATGGTGGCGGTGGGAGAGACCGTGGATATGGTGGTGATGGTGGGTCCCGCTACTCGAGAGGAGGCGGTGGTTCGGATGGAGGAAGCTGGAGGAATTAA 552 0.5797 MASAEVEFRCFVGGLAWATDHDALEKAFSQFGEIVESKVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQSRGKGGGGGGGGGYGGGGGGYGGGGGYSRGGGGYGGGGGRREGGYNRNGGGGGYGGGGGGYGGGGGYGGGGRDRGYGGDGGSRYSRGGGGSDGGSWRN* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0096 183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Gso6g0096 183 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN GRP1A-LIKE 1 132 - -
Gso6g0096 183 Gene3D - 2 121 IPR012677 -
Gso6g0096 183 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Gso6g0096 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Gso6g0096 183 SMART rrm1_1 9 82 IPR000504 GO:0003723
Gso6g0096 183 MobiDBLite consensus disorder prediction 148 183 - -
Gso6g0096 183 PANTHER TRANSFORMER-2-RELATED 1 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0096 Gso-Chr6 939217 940527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0096 10 89 Eukaryotic Initiation Factors Gene Family AT4G34110 36.250 8.42e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0096 - K13195 gmx:100777821 172.94