Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0094 ATGTTGCACTGCGCCAACACGTCGGGGAATCTGGCTGTGGCTGGGGACATGACAGTGTTGGAAAGACAGAGGGCGAGGATGAAGTGGCAAGAAGAGCAAGGGTACTTTTCTGGCAACAGCTTCAACGGTGTTTTTTCTTCTTCTTCTCTGCACGTTCATGATTCCATTATGGTGGCTGCTGACTCCGGTTGTGCACTCGCTGAGGTCGTGGCTCAGGCCCAGGCTCGCTCAACCAATTCTTCTTCAATTTCAAGGACTTTTAGTTGTCCACCTGCTCTGGTGGAGCCCGAGTCCGAGTCCAAGCCCAAGCCCAAGCCCACCGACTCCTCTGTTGGGAAAGACGGTTTCAAGAAGAGGAAACCTGACAAGCCTCACCATCCGAAGGTTGTTGCAGAAAATGATAACAAAGACAAGAGGATCAAATTCGGCTCTGATGATGGAGAATCCAAAATCACCAAGAGTAACACAACAAACACAAATACCAACAACAACAAAGAAACTTGCGCAGAGACTTCAAATTCCAAGGCCTCCGAAAAGCCTGATTACATTCATGTCCGAGCACGTCGTGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAGTTAGAAGGGAAAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTGCCCGGTTGCAACAAAGTCACGGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTGAGTATTGATGATCTATTTGACAAAGATGTTTTTTCTACTTGTGCTACAAATTTTCCAAACATAGGAATTTCATCAACATCAGACATTTCTAACCCTGCCTATCTTCAGTTTAATTCCCCACAACAAATTTTTTCATATGATGGATTAGACCCATCCGATATGGGGCTCAGAAGGACCATAAGTGCTCCTGTATCAATGCCTGAAACATATCTTCAATCGTCCTGTTTCACACAAATGCTACCCTCCTCAACATGGGAAGGTGATTTCCAAAACCTTTGCAATTTTGATTTTGATCAAGCACGGGCTACATCTTTCCCTTCTCAGCTGTTATCAGGTCTGGTTGAAGCTGGCAATCTAAAGATGGAGATGTAG 1155 0.4459 MLHCANTSGNLAVAGDMTVLERQRARMKWQEEQGYFSGNSFNGVFSSSSLHVHDSIMVAADSGCALAEVVAQAQARSTNSSSISRTFSCPPALVEPESESKPKPKPTDSSVGKDGFKKRKPDKPHHPKVVAENDNKDKRIKFGSDDGESKITKSNTTNTNTNNNKETCAETSNSKASEKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVTGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDLSIDDLFDKDVFSTCATNFPNIGISSTSDISNPAYLQFNSPQQIFSYDGLDPSDMGLRRTISAPVSMPETYLQSSCFTQMLPSSTWEGDFQNLCNFDFDQARATSFPSQLLSGLVEAGNLKMEM* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0094 384 SMART finulus 197 247 IPR011598 GO:0046983
Gso6g0094 384 MobiDBLite consensus disorder prediction 75 180 - -
Gso6g0094 384 MobiDBLite consensus disorder prediction 125 148 - -
Gso6g0094 384 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 69 363 IPR024097 GO:0006355
Gso6g0094 384 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 241 IPR011598 GO:0046983
Gso6g0094 384 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 259 IPR036638 GO:0046983
Gso6g0094 384 MobiDBLite consensus disorder prediction 149 176 - -
Gso6g0094 384 Gene3D - 188 262 IPR036638 GO:0046983
Gso6g0094 384 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 69 363 - -
Gso6g0094 384 MobiDBLite consensus disorder prediction 98 118 - -
Gso6g0094 384 Pfam Helix-loop-helix DNA-binding domain 195 242 IPR011598 GO:0046983
Gso6g0094 384 CDD bHLH_AtBPE_like 181 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0094 Gso-Chr6 912226 914739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0094 16 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 39.891 7.40e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso6g0094 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0094 - - gmx:100819517 706.442