Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0075 ATGGCAACTTACTACACAAGTTCGAGTAATGAAAGGGATGCAGTGCCTATGTTGTGTCTTAGGGAACCTTTGCCTGATTCATATCCCGAGACACCAATTTTGCCGAGCAATATGTCATTGTATATGAACTCTGGATCATATTCAGAAGCATTGTCCGGCAATTCTCAGCCGCAAAACAATTGCTTTGTGATTCCATCACCATCAGTAGGTGCATCACATTCCACTCCTGAACAACAAGAAATCTTGGCCAATATTGGTGGGTTCCAAACCGGGGTTCATGATTTCAGTGCATGGAGGGAGGGTAGAAGTGAGATGCTAGTCAGACAAACTATGGATGGACAGAACTTACAAGGTCAGGGATTATCTCTCAGCCTTGGAACCCACATACCCTCAGGAATTCAAATGCCTTCTATCCATGATAGGAATCACAGGCCAAGTTTTGATTCATTTTTGGGTACTAATCCATCAAGTTCGGGCAACGAGGCTGCCTACCAAAAGGGTTCATCTAGAGATGAGGGTATGAGACATTCTGAAAATCTTCCACCTGGCTTACCTGAAGCTAATCAAGATTTGGACAAAGCGGATTTTTCAATTCATAGAATGTCTAGTGTTGGAAGAACAGTTCCTAGCTTCAAATACCTCAAGGCAGTGCAACTACTACTTGATGAAGTTGTTGACATCCGAAAAGCTATTAAAAGACCTGTTGTGAGAAGTTATAGCACACATGAGAACTCTAAGAAGAATTCTAATGAGGATGATGAGCAACTAGAAAATGACAGGCCTTCTGCAAATGGAGTGCCTAATTCTCAAGCTTCAACTAGTAAGACCTCTTGTGAGCTTTCACATGCTGAAAAACAAGATCTGCACCACAAGTTAACAAAGCTTTTGTCAATGTTGGACGAGGTTGACAATAGGTACAAACAATATTATCAGCAGATGCAGATTGTGGTGTCATCATTTGATGTGGTAGCAGGATGTGGAGCAGCTAAACCATACACAGCCCTTGCTCTTCAAACCATTTCATGCCATTTCCGGTGTTTGCGTGATGCAATCACTGGTCAAATCAGTGCAACACAAAAGAACCTTGGAGAGCAAAATGCTTCTGGAAGTAACAAAGGAGTTGGAATGACAAGACTAAAGTACATGGACCAACAAATCCGACAACAGAGAGTTCTTCAGCAGCTTGGCATGATGCAACATGCATGGAGACCACAAAGGGGGCTTCCAGAAAGCTCTGTTGTAATTCTTCGCGCTTGGCTTTTTGAGCATTTTCTTCATCCCTATCCAAAGGATTCTGATAAGATCATGCTAGCAAAACAGACAGGTTTGACCAGAAGTCAGGTCTCAAATTGGTTTATAAATGCGCGTGTGCGTCTATGGAAACCTATGATTGAAGAGATGTACAAGCAAGAGAATTGTGATGCTGACATGGACTCAAGTTCTTCATCTGAAAATGTGTCCAAGGTAACAAAAAGTGATGTCAAGACCTCCAATGATATGGGTGATGATTGGCAGCACTGTCAAAGTCCAATAGTAGCCGATACAAATCACATTGGTGGACAAGCTAAGGACCTTAGACATGATCAGGCTCTTGATACAGAAATTATGTCATCCACTGGATTAGCTAGTCTCATAAATGGAGTTCGTGGGGTTGAAACTGAACATAGGTAA 1671 0.4213 MATYYTSSSNERDAVPMLCLREPLPDSYPETPILPSNMSLYMNSGSYSEALSGNSQPQNNCFVIPSPSVGASHSTPEQQEILANIGGFQTGVHDFSAWREGRSEMLVRQTMDGQNLQGQGLSLSLGTHIPSGIQMPSIHDRNHRPSFDSFLGTNPSSSGNEAAYQKGSSRDEGMRHSENLPPGLPEANQDLDKADFSIHRMSSVGRTVPSFKYLKAVQLLLDEVVDIRKAIKRPVVRSYSTHENSKKNSNEDDEQLENDRPSANGVPNSQASTSKTSCELSHAEKQDLHHKLTKLLSMLDEVDNRYKQYYQQMQIVVSSFDVVAGCGAAKPYTALALQTISCHFRCLRDAITGQISATQKNLGEQNASGSNKGVGMTRLKYMDQQIRQQRVLQQLGMMQHAWRPQRGLPESSVVILRAWLFEHFLHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVRLWKPMIEEMYKQENCDADMDSSSSSENVSKVTKSDVKTSNDMGDDWQHCQSPIVADTNHIGGQAKDLRHDQALDTEIMSSTGLASLINGVRGVETEHR* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0075 556 SUPERFAMILY Homeodomain-like 403 469 IPR009057 -
Gso6g0075 556 SMART HOX_1 402 466 IPR001356 GO:0003677
Gso6g0075 556 SMART prehox3 202 353 IPR006563 -
Gso6g0075 556 MobiDBLite consensus disorder prediction 147 165 - -
Gso6g0075 556 MobiDBLite consensus disorder prediction 237 282 - -
Gso6g0075 556 MobiDBLite consensus disorder prediction 244 259 - -
Gso6g0075 556 MobiDBLite consensus disorder prediction 261 279 - -
Gso6g0075 556 MobiDBLite consensus disorder prediction 134 189 - -
Gso6g0075 556 Pfam Associated with HOX 210 352 IPR006563 -
Gso6g0075 556 CDD homeodomain 402 463 IPR001356 GO:0003677
Gso6g0075 556 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 97 513 - -
Gso6g0075 556 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 97 513 - -
Gso6g0075 556 Gene3D - 398 476 - -
Gso6g0075 556 ProSiteProfiles 'Homeobox' domain profile. 399 462 IPR001356 GO:0003677
Gso6g0075 556 Pfam Homeobox KN domain 419 458 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0075 Gso-Chr6 760210 764194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0075 26 521 Homeobox Transcription Factor Family AT4G34610 46.184 1.45e-124 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso6g0075 POX 2.6e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0075 - - gmx:100816667 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0084 4 770167 774486 Gso6g0075 6 760210 764194 GST