Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0074 ATGGCTAAACCGAAGGCTCCAAGACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGCTGGCGATTGCATCCTCATGCGGCCCTCCGATCCGTCGAAACCGTCGTACGTAGCGAGGATCGAGCGGATCGAAGCCGACGCGCGCGGCGCCAACGTGAAGATTCACGTGCGCTGGTACTACCGGCCGGAGGAATCAATCGGCGGTCGACGCCAGTTTCACGGCTCCAAGGAGGTTTTCCTCTCCGATCACTTCGATGTTCAGAGTGCCGACACAATCGAAGCCAAGTGTACGGTCCACAGCTTCAAGAGCTACACGAAGCTCGATGCTGTCGGAAACGACGATTTCTTCTGTCGTTTTGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTGTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTGGTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAGTTGCTCTGCTGAAGGTCAAAAAAAGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAGGTGGATACTAAACGCCGTCGTAGGTAA 651 0.5069 MAKPKAPRRTLESYSVKHISKTIRAGDCILMRPSDPSKPSYVARIERIEADARGANVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEAKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCTDWFHPACIDMTVEEAKRLDHFFCESCSAEGQKKLQNSHSASRHSDTKVDTKRRRR* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0074 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 203 IPR013083 -
Gso6g0074 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Gso6g0074 216 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
Gso6g0074 216 Pfam PHD-finger 141 189 IPR019787 -
Gso6g0074 216 Gene3D - 2 135 IPR043151 -
Gso6g0074 216 SMART PHD_3 141 188 IPR001965 -
Gso6g0074 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Gso6g0074 216 PANTHER OS08G0421900 PROTEIN 1 216 - -
Gso6g0074 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Gso6g0074 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Gso6g0074 216 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 216 IPR045205 GO:0006325|GO:0035064
Gso6g0074 216 MobiDBLite consensus disorder prediction 194 216 - -
Gso6g0074 216 Pfam BAH domain 22 136 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0074 Gso-Chr6 754012 757679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0074 41 139 Core DNA Replication Machinery Family AT4G14700 31.313 8.72e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso6g0074 BAH 3.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0074 - - gmx:100787968 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0083 4 763445 767162 Gso6g0074 6 754012 757679 GST