Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0072 ATGTCTTTGGGAGAAAAGGATCAGATGCAAAGGGTGAGGCAAGGCGAAGAAGAAGTAGCATCAGGGGGTTCAAAGTGCCAAGACTGTGGGAACCAAGCCAAGAAGGAATGTTCATACTTACGGTGCAGGACTTGCTGCAAGAACAAAGGTTTTCACTGCCAAACCCATATCAAGAGCACTTGGACTCCTGTGGATCATAGGAGACGCCACTTTCAGGGTCAGGGAGGAGATCATCATATTCCTCAAAACCACAACCAGATCAACCCATATTCAGAGTTGAGATTTCCGGCTGCTACGAATTCGATGGCTACATTTCGGTGCATTCACGTTCGTTCTATGGATGATGCGGTTAATGAAATAGCGTATCAAACATCTGTGAACATTGGGGGGCATGTATTTAGTGGACTACTATATGATCAAGGCCCTGAGTACCAAAGAGGTCATCAAGGTGAGAGTTCCACGGGCTTTGTTGATAAGCAGCAGAATAGTAATAATAATAATCTGGATAGTAGTGGTGCAAGTGCAACTCACCAAGAGTACCTGTTTCCCCTTTCTTCCTTCAGGCCCGGTATGCCCTATTTGACATACCCAAGATCTTAG 600 0.455 MSLGEKDQMQRVRQGEEEVASGGSKCQDCGNQAKKECSYLRCRTCCKNKGFHCQTHIKSTWTPVDHRRRHFQGQGGDHHIPQNHNQINPYSELRFPAATNSMATFRCIHVRSMDDAVNEIAYQTSVNIGGHVFSGLLYDQGPEYQRGHQGESSTGFVDKQQNSNNNNLDSSGASATHQEYLFPLSSFRPGMPYLTYPRS* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0072 199 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 25 66 IPR006510 -
Gso6g0072 199 MobiDBLite consensus disorder prediction 146 173 - -
Gso6g0072 199 MobiDBLite consensus disorder prediction 1 30 - -
Gso6g0072 199 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 94 142 IPR006511 -
Gso6g0072 199 MobiDBLite consensus disorder prediction 143 173 - -
Gso6g0072 199 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 179 IPR007818 GO:0003700|GO:0006355
Gso6g0072 199 PANTHER BNAC01G23660D PROTEIN 1 179 - -
Gso6g0072 199 Pfam Domain of unknown function (DUF702) 88 143 - -
Gso6g0072 199 Pfam Domain of unknown function (DUF702) 23 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0072 Gso-Chr6 742138 743461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0072 23 189 C2H2 Transcription Factor Family AT2G21400 46.409 9.65e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gso6g0072 DUF702 8.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0072 - - gmx:102663693 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0081 4 747503 748879 Gso6g0072 6 742138 743461 GST