Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0068 ATGGAGGTAGCAGTGGCCAAAGCGTTGAAACCGAGTTTAAGGAGTGAGTTCATCGTTCAGAAAATGCACTGCGAGGATATTTTCAGCCTGAACGCGAACACCGTCGCCGTCGGCGAAGATTTCTCCGTGGACGACCTATTTGACTTCTCTAACGGCTCTCTGCACAACGAACACCAACAAGAGTGCGACGAAGAGAAACAAAGTTTATCTGCTTCGTCGCAGTCACAGGACCGTGGAGAAGACGATAGCAACTCCAATTCCACCGGCGTTTCCTATGATTCACTTTTCTCCACCGAATTAGCCGTTCCGGCCGGTGACTTGGAGGACCTAGAGTGGGTTTCACACTTCGTGGACGATTCACTCCCGGAGCTGTCACTTTTATACCCGGTTCGTTCGGAGGAAGCGAACCGGTTTGTTGAACCGGAACCCTCAGTGAAGAAAACGCCTCGTTTTCCGTGGGAAATGAAAATAACGAGCAAGGCGAGAAGCGTACGGAATAGGAAGCCCAACACTCGCGTGTGGTCATTGGGCAGCACGTTGCTCTCGCTCCCGTCTTCGCCGCCCGCGAAGAAGCAGAAGAAGCGGGCTGAGGCCCAGGTCCAGCCCGTTGGAGTCCAGATTCAGCGGCGGTGCAGTCACTGCCAGGTGCAGAAGACGCCGCAGTGGAGGACCGGCCCACTGGGCGCCAAAACCCTTTGCAACGCGTGCGGGGTTCGGTACAAGTCGGGTCGGTTATTTTCGGAGTATAGACCGGCGTGTAGTCCCACCTTCTGCAGCGATATTCACTCCAATAGTCACCGTAAAGTGTTAGAGATTCGGAAGAGGAAAGAGGTGGCTGAACCGGATACCGGCTTGGCCCAGACTCAAATGGTTCCCACCTGCTGA 885 0.5458 MEVAVAKALKPSLRSEFIVQKMHCEDIFSLNANTVAVGEDFSVDDLFDFSNGSLHNEHQQECDEEKQSLSASSQSQDRGEDDSNSNSTGVSYDSLFSTELAVPAGDLEDLEWVSHFVDDSLPELSLLYPVRSEEANRFVEPEPSVKKTPRFPWEMKITSKARSVRNRKPNTRVWSLGSTLLSLPSSPPAKKQKKRAEAQVQPVGVQIQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRKRKEVAEPDTGLAQTQMVPTC* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0068 294 PANTHER GATA TRANSCRIPTION FACTOR 1 294 - -
Gso6g0068 294 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 205 266 - -
Gso6g0068 294 SMART GATA_3 205 259 IPR000679 GO:0006355|GO:0043565
Gso6g0068 294 ProSiteProfiles GATA-type zinc finger domain profile. 209 241 IPR000679 GO:0006355|GO:0043565
Gso6g0068 294 CDD ZnF_GATA 210 267 IPR000679 GO:0006355|GO:0043565
Gso6g0068 294 MobiDBLite consensus disorder prediction 66 90 - -
Gso6g0068 294 Gene3D - 205 255 IPR013088 GO:0006355|GO:0008270
Gso6g0068 294 PIRSF Txn_fac_GATA_plant 18 293 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gso6g0068 294 MobiDBLite consensus disorder prediction 56 90 - -
Gso6g0068 294 Pfam GATA zinc finger 211 244 IPR000679 GO:0006355|GO:0043565
Gso6g0068 294 PANTHER GATA TRANSCRIPTION FACTOR 1 294 - -
Gso6g0068 294 ProSitePatterns GATA-type zinc finger domain. 211 236 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0068 Gso-Chr6 685428 686962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0068 40 281 C2C2-Gata Transcription Factor Family AT4G36240 45.059 3.48e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso6g0068 GATA 9.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0068 - - gmx:100780311 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0077 4 692819 694443 Gso6g0068 6 685428 686962 GST