Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0065 ATGGACGTCGAAAACGAGGAAGCTCCACTCCAACAACACTCTGATTCACAATGCCACACCGACCTGCCAAATCTCCCCTACGCCTCTGCCGTTGACCTTGAAGAGGCGGCGGCAACGACGACGGAGGCTGTGGCGGTTGAACCCGATGCGCTGGCGGTGTCCGACGATGGCGCCGAAACGCAAGTGACGGACGTAGCGGGTGACGAGATGATTGAGGAGAAGGCGAACGAAGGAATTGATGTGGATGACGTGGCTTTGGAGACGGATATGGTGGAAGAGGAACCGAATTTGGCAATTGATGCCGAAGACGACGAAATTGAGGACAGGAACACAAATGAAGACGCTTTGATGGAAGACGAACAACAACAAGAAGAAGAGGACGTAGAGCAAGAAGGAGAGGGGGAGGAAGAAGAACAGCAACAAGTAGATGAGGAGGAAGAAGGAGAACAGCAACAAGAAGATGAGGAAGAAGAAGGAGAAGAAGAAGAAGAAGCAGCAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAGCAAGGAAAAGAAGAAGATGGTGGAATGGCAATGACAGAAGACACAGAGAAGTCGGAGAAGAGTGCCGCTGTGAGTGGCGGGAAGAGGAGGCGTGGCGCTGGGAAGAATGCTAAGGCTACAGGGAGAGTTGCATCAAGGAAAAAGATGGAGGAGGACGTTTGTTTCATTTGCTTCGATGGGGGTGACCTTGTGCTTTGTGACCGCAGGGGATGCCCCAAGGCTTACCATCCTTCCTGCGTTAATCGTGACGAGGCCTTCTTTCGAGCCAAGGGAAAGTGGAATTGCGGTTGGCATCTTTGCAGCAACTGTGAGAGGAATGCATCTTATATGTGCTATACATGTACGTTTTCTTTGTGCAAGGGGTGCATCAAAGACACTGTTATCTTATGTGTTAGGGGAAACAAGGGCTTTTGTGAGACATGCATGAGAACCGTAATGTTAATTGAACAGAATGAACAGGGAAACAATGTGGGACAAATAGATTTTGATGACAGAAACAGCTGGGAGTATCTCTTCAAGGACTATTACATAGATATAAAAGAAAAACTATCTCTCACATTTGATGAACTCACTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCATTCTAAAGAAGAATCACCGGATGAAATTTTTGATGCCACTAATGACAGAGGATCAGATTCAGATAGCTCCTATGAGAATGCAGATTTGAGTCGTTCTAAAAGAAAAAAGGCCAAGAAACGGGGGAAGTCCCGTTCCAAAGGAGATGACAGCTCAGAGTGGGCTTCAACAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGAGACAAATCTGTTTTATCTCAGTTTGATGTGCATACTCTTTTGCTAGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAGATTATTTGTGATGCAAGACTTCAAAATCTGTTTGGAAAACCAAAAGTGGGACATTTTGAAACGTTAAAGCTTCTTGAATCCCATTTCCTTCTAAAAGATGATTCTCAGGCTGAAGATCTGCAGGGAAGTGTTGTTGACACTGAAATGAGTCATTTGGAAGGTGATGGCAATCCCAATTCACATACGAAAGCTGGCAAAGATAAGAGACGAAAAAATCGTAAAAAGGGTGATGAGAGAGGACTTCAAACTAATGTTGATGATTATGCAGCCATTGATAACCATAATATTAATTTAATTTATCTAAGACGTAACTTGGTGGAAGATCTTCTTGAAGATACAGAGAAGTTCCATGATAAAGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAACAGGATTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGCCATATAAAGTTGGTAAAAGGATGACAGAAATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTTTCAATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGTCTCCGCCAAAGCATAAAGTGTGGCCTCATAAATCGGCTAACTGTGGGTGACATTCAGGACAAAGCATTGGTGCTTCAGGAAGCTAGAGTAAAAGATTGGCTAGAAACAGAGACAGTGCGGCTGAGTCATCTCCGTGATAGAGCTAGTGAGAAAGGACGCAGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAAACACCTGAAGAACGTCAACGCAGGTTGGAGGAAATTCCAGAAATACACGTGGATCCAAACATGGATCCAAGTTATGAGTCTGAAGAAGATGCAAATGAAGTGGATGATAAAAGACAAGAAAACTACATGAGACCAAGAGGGTCTACTGCATTTGGAAGGAGGGGGAGAGATATTGTTTCTCCTAGAAGTGGTTCTATTTCAAATGATTCTTGGAGTGGAACAAGGAATTATTCTAATGTGAATCATGAACTCGGCAGAAATTTGTCTAATAAGGGATTTTCAATCAAAGGTGATAATGCTTCTAATGCTAACGAGGCACTAAATGATGCTCAATTGCATCGGGGAAGAGATCGGGAATCACAACTATCTAATAGCTGGGAGAGGCAAAAGCTATCTTCAACCTTGGAAAGTGGCGCTAAAAATACCCAACCATTGGTAGCATCTGAGTCTTTTTCTTCTGCTGTATCAGAAGCTTCTGCAGCACCATCTTCTGCCGGAATAACTCCTCCAGCTGTGAAAATAAATGAAACTGAAAAGATGTGGCATTACCAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCCATGGTGCAACTACACAAATGGAGTAACACAGGATACTTTCCTGCTGATTTGAGGATTTGGAGAACCACTGAGAAGCAAGATGATTCTATACTCCTAACAGATGCCTTGGCAGGGAATTTTTCTAAGGAACCATCAATAGTGGATAAAGCTCAATCGGTGTATGATTTACATTACCCATCCTCATACTCTAGGAAGTCTCCACAACAAGGTATAGAAGTTCAAGCTGGAGAAAGACTGTCATTAGATCAAAATTGTGGATCTTGGAATTCACATAGTACTCTGGGTTCTCCGGGACAAACAACAGGAGGAAGTTGGAGATCTAAAGATAATATGAATTCTTTAGCTAATAGAACTTCTCCATTGGCAGTTGAGGTCCCCAAGAACCCTGCAAATGGCTGGGGTTCTGATGCTGGTGTTAGGAATGAAGCAACAAATCTTCCTTCACCTACTCCCCAGACTACTCCTGGTGGGACTAAGGGGCTGGCTTTTGAAAATAAATGGTCACCAACACCTGTCCAGTTGCCTGGGTCTCTCGTAGGAAATTCATTCCCAGGCAGTCACAGAGTTTTGCAGGCCTCTGTGGTAGTGCACCCAGAGCATGCTGTACAAAATGCTGAAAAAGGCTCAAGTTCACAACCTGGTATTAGTTCAGCTTCTACGGATAATAACAAGTTACATCCACAAGCAACAGCAGTGGCACCTGTTGTGGCTTCAGGGGTTGACATCAAAATGACAGGTGCAAATATGCAAAACCAGGTTGTGAGTAGCCACAACTCTCATGCTGAAACTCAAGGGTGGGGTTCTGCTGGGGTTCCAAAGCCAGAACCACTGGCCTGGGGAGGTGCATCATCTCAAAGGATAGAACCAAATAATCCTGCTACCATGCCTGCCCAGCCAGCTTCCCATGCCCCCTGGGGTGATGCTTCGTCTGTGCAGAACACTGCCTCTTTTAACACTGGAAATCCAATTGCGAGTTTACCCACACCTGGATTTCTGGGCATGACTGCACCTGAGCCTTGGAGACCACCAGCTTCAAGTAGTCAGTCAAACACCACAGCTCCATCTCCAGCTCAACCCAATATGCCTTGGGGCATGGGCATGCCAGGAAATCAGAATATGAACTGGGGTGGGGTTGTACCTGCCAACATGAATGTAAACTGGATGCCTGCGCAGGTGCCAGCACCTGGAAATTCAAATCCAGGATGGGCTGCTCCTAGTCAGGGGCTGCCTCCTAGTCAGGGGCTGCCTCCCGTGAATGCAGGTGGCTGGGTTGGACCTGGTCAAGGCCGTTCCCATGTAAATGCAAATGCAGGTTGGGTTGGGCCTGGTCAGGGTCTTGCACCTGGAAATGCCAATCCTGGTTGGGCTGCACCGACTGGGAATCCAGGCATGTGGGGAAGTGAGCAAAGTCATAATGGAGACAGGTTCCCCAACCAAGGGGATCGTAGAGATTCTGGTTATGGTGGTAAATCTTGGAACAGGCAATCATCATTTGGCAGCGGAGGCAGAGGAGGTTCTTCCAGGCCTCCTTTTGGGGGACAAAGAGGAGTCTGCAAGTATTATGAGAGTGGACGTTGCAGGAAGGGGACTTCTTGTGATTTTCTACACACTTAG 4431 0.4518 MDVENEEAPLQQHSDSQCHTDLPNLPYASAVDLEEAAATTTEAVAVEPDALAVSDDGAETQVTDVAGDEMIEEKANEGIDVDDVALETDMVEEEPNLAIDAEDDEIEDRNTNEDALMEDEQQQEEEDVEQEGEGEEEEQQQVDEEEEGEQQQEDEEEEGEEEEEAAAEEEEEEEEEEEEKQGKEEDGGMAMTEDTEKSEKSAAVSGGKRRRGAGKNAKATGRVASRKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCERNASYMCYTCTFSLCKGCIKDTVILCVRGNKGFCETCMRTVMLIEQNEQGNNVGQIDFDDRNSWEYLFKDYYIDIKEKLSLTFDELTQAKNPWKGSDMLHSKEESPDEIFDATNDRGSDSDSSYENADLSRSKRKKAKKRGKSRSKGDDSSEWASTELLEFVMHMRNGDKSVLSQFDVHTLLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPKVGHFETLKLLESHFLLKDDSQAEDLQGSVVDTEMSHLEGDGNPNSHTKAGKDKRRKNRKKGDERGLQTNVDDYAAIDNHNINLIYLRRNLVEDLLEDTEKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTEILLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQEARVKDWLETETVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDANEVDDKRQENYMRPRGSTAFGRRGRDIVSPRSGSISNDSWSGTRNYSNVNHELGRNLSNKGFSIKGDNASNANEALNDAQLHRGRDRESQLSNSWERQKLSSTLESGAKNTQPLVASESFSSAVSEASAAPSSAGITPPAVKINETEKMWHYQDPSGKVQGPFSMVQLHKWSNTGYFPADLRIWRTTEKQDDSILLTDALAGNFSKEPSIVDKAQSVYDLHYPSSYSRKSPQQGIEVQAGERLSLDQNCGSWNSHSTLGSPGQTTGGSWRSKDNMNSLANRTSPLAVEVPKNPANGWGSDAGVRNEATNLPSPTPQTTPGGTKGLAFENKWSPTPVQLPGSLVGNSFPGSHRVLQASVVVHPEHAVQNAEKGSSSQPGISSASTDNNKLHPQATAVAPVVASGVDIKMTGANMQNQVVSSHNSHAETQGWGSAGVPKPEPLAWGGASSQRIEPNNPATMPAQPASHAPWGDASSVQNTASFNTGNPIASLPTPGFLGMTAPEPWRPPASSSQSNTTAPSPAQPNMPWGMGMPGNQNMNWGGVVPANMNVNWMPAQVPAPGNSNPGWAAPSQGLPPSQGLPPVNAGGWVGPGQGRSHVNANAGWVGPGQGLAPGNANPGWAAPTGNPGMWGSEQSHNGDRFPNQGDRRDSGYGGKSWNRQSSFGSGGRGGSSRPPFGGQRGVCKYYESGRCRKGTSCDFLHT* 1477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0065 1476 MobiDBLite consensus disorder prediction 91 222 - -
Gso6g0065 1476 SUPERFAMILY SWIB/MDM2 domain 436 513 IPR036885 -
Gso6g0065 1476 SUPERFAMILY CCCH zinc finger 1454 1475 IPR036855 GO:0046872
Gso6g0065 1476 SUPERFAMILY GYF domain 914 975 IPR035445 -
Gso6g0065 1476 Gene3D SWIB/MDM2 domain 424 522 IPR036885 -
Gso6g0065 1476 CDD Bbox1 279 306 - -
Gso6g0065 1476 MobiDBLite consensus disorder prediction 91 182 - -
Gso6g0065 1476 ProSiteProfiles GYF domain profile. 922 976 IPR003169 GO:0005515
Gso6g0065 1476 MobiDBLite consensus disorder prediction 1194 1246 - -
Gso6g0065 1476 Pfam GYF domain 925 965 IPR003169 GO:0005515
Gso6g0065 1476 MobiDBLite consensus disorder prediction 1280 1297 - -
Gso6g0065 1476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 325 IPR013083 -
Gso6g0065 1476 MobiDBLite consensus disorder prediction 532 564 - -
Gso6g0065 1476 Gene3D - 923 982 IPR035445 -
Gso6g0065 1476 MobiDBLite consensus disorder prediction 1080 1098 - -
Gso6g0065 1476 MobiDBLite consensus disorder prediction 852 888 - -
Gso6g0065 1476 MobiDBLite consensus disorder prediction 805 820 - -
Gso6g0065 1476 Pfam SWIB/MDM2 domain 439 512 IPR003121 -
Gso6g0065 1476 MobiDBLite consensus disorder prediction 1273 1300 - -
Gso6g0065 1476 SMART swib_2 446 517 IPR019835 -
Gso6g0065 1476 PANTHER UNCHARACTERIZED 57 1476 - -
Gso6g0065 1476 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 57 1476 - -
Gso6g0065 1476 ProSitePatterns Zinc finger PHD-type signature. 234 294 IPR019786 -
Gso6g0065 1476 SMART PHD_3 233 279 IPR001965 -
Gso6g0065 1476 MobiDBLite consensus disorder prediction 1140 1163 - -
Gso6g0065 1476 SUPERFAMILY Plus3-like 574 704 IPR036128 GO:0003677
Gso6g0065 1476 MobiDBLite consensus disorder prediction 1335 1454 - -
Gso6g0065 1476 MobiDBLite consensus disorder prediction 1027 1058 - -
Gso6g0065 1476 SMART gyf_5 923 978 IPR003169 GO:0005515
Gso6g0065 1476 MobiDBLite consensus disorder prediction 854 868 - -
Gso6g0065 1476 ProSiteProfiles Zinc finger C3H1-type profile. 1451 1476 IPR000571 GO:0046872
Gso6g0065 1476 ProSiteProfiles Zinc finger PHD-type profile. 231 297 IPR019787 -
Gso6g0065 1476 ProSiteProfiles Plus3 domain profile. 573 706 IPR004343 GO:0003677
Gso6g0065 1476 MobiDBLite consensus disorder prediction 869 888 - -
Gso6g0065 1476 MobiDBLite consensus disorder prediction 1428 1442 - -
Gso6g0065 1476 Coils Coil 118 187 - -
Gso6g0065 1476 SUPERFAMILY FYVE/PHD zinc finger 230 284 IPR011011 -
Gso6g0065 1476 MobiDBLite consensus disorder prediction 378 434 - -
Gso6g0065 1476 MobiDBLite consensus disorder prediction 751 767 - -
Gso6g0065 1476 MobiDBLite consensus disorder prediction 1027 1098 - -
Gso6g0065 1476 CDD PHD5_NSD 233 278 - -
Gso6g0065 1476 MobiDBLite consensus disorder prediction 1 24 - -
Gso6g0065 1476 ProSiteProfiles SWIB/MDM2 domain profile. 431 514 IPR003121 -
Gso6g0065 1476 CDD GYF 922 977 IPR003169 GO:0005515
Gso6g0065 1476 MobiDBLite consensus disorder prediction 1143 1163 - -
Gso6g0065 1476 Pfam Plus-3 domain 578 681 IPR004343 GO:0003677
Gso6g0065 1476 CDD SWIB-MDM2_like 437 512 - -
Gso6g0065 1476 MobiDBLite consensus disorder prediction 183 206 - -
Gso6g0065 1476 MobiDBLite consensus disorder prediction 751 820 - -
Gso6g0065 1476 SMART rtf1 573 683 IPR004343 GO:0003677
Gso6g0065 1476 MobiDBLite consensus disorder prediction 380 399 - -
Gso6g0065 1476 Gene3D - 575 704 IPR036128 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0065 Gso-Chr6 651096 662870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0065 231 304 PHD Transcription Factor Family AT4G14920 39.189 1.19e-06 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gso6g0065 Plus-3 2.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0065 - - gmx:100815079 2744.92