Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0050 ATGGTTCTGAATGTTCATCGCGTATATTCTCCTACGCTGAATTCGATAATACTCTTACTTGCTCTCTGCACTTTATCAGATTGCTATGACCCGTTGGATCCTAATGGAAACATTTCCGTAACTTTTGACATCCTCGAACGTACTACAGATAATGGATATCTGGCAAGGGTGACCCTTGAAAACTACTATCAATATCGGCATGTAGAGAAACCCGGGTGGAAACTAGGATGGACGTGGGCTAACAATGAAGTGATATGGTCAATGAGTGGTGCCATAGCAACTGATAGAGGGAATTGTTCATCTTACAGTGGTTCTCAGATGCCACATTCATGCAAGAAAGATCCCACCATAGTTGATCTCTCTCTAGATGTCTCGCAAAACAGGTCAGAGCATTGTTGCCGTGGTGGTCTCCTCTCTGCCTGGTCTATTGATCCTTTCAATGCCTTCTCTTCATTTGAACTTGAAGTTCGCAACGTGGGAGATAACAACCCACTTGGACAAGCTCCTAATAATCTTACATTGATGGCCCCAGGTCCTGGTTACACTTGTAGCCCCCTTCTTGACACTGATCTCTCTGTCTCCTCAGATTTTGGGGGACTAAGACAAGTTCCTGTTCTCAGAACTTGGAAGTCAACATGTGCATACTCCAGTTTCATAGCAAACACAATACCGGTATGCTGTGTTTCCCTCTCATCATTTTACAACCCTGCCATCACATCTTGCCGTAATTGCAGTTGTGGATGCAGAGAAGCAGATAAAAGTACAGCATCTTGCATAAGGCCTAGTTCCTTGCCACGGTCTAATGGAGACAACACAATTGATGAAATAATAGAATGCACCGACCACATGTGCCCAGTTCGAGTCCATTGGCATTTCAAGAACAACTATATGAACCAATGGAGGGTGAAGCTTACAGTTTCTAACTACAATTACAACAGAAACTACTCAAACTGGAACGTGCTGGTTCAACATCCTGGTTTCACCCAAAAAGCAAGAACTTACAGCTTCAACAGCACTAGACTTCCTACCCTTGGGCTCCAAGATGGAGTTTCCCTTTTTTGGGGGATAGACTATTACAACAATGAGCTAGTGCATTCTGATAAGGGTGTTGTGGGTCTTGTGACAACAGAAATACTATTGGATAAAGATCCAAATTCTTTCACAGTAAGTAATGGATGGGCATTTCCGAGAAGAATATATTTCAATGGGGAGAACTGCGAAATGCCTTTACCTGACACGTTTCCAATGTTACCCAATGGTAGCTCCAGTTTAAGAGCTACTTACTGTGGTTTCAGTCTTTTATTTATCCTCTTGTTTCTTGCCCTACTACTCCTTTAA 1338 0.4283 MVLNVHRVYSPTLNSIILLLALCTLSDCYDPLDPNGNISVTFDILERTTDNGYLARVTLENYYQYRHVEKPGWKLGWTWANNEVIWSMSGAIATDRGNCSSYSGSQMPHSCKKDPTIVDLSLDVSQNRSEHCCRGGLLSAWSIDPFNAFSSFELEVRNVGDNNPLGQAPNNLTLMAPGPGYTCSPLLDTDLSVSSDFGGLRQVPVLRTWKSTCAYSSFIANTIPVCCVSLSSFYNPAITSCRNCSCGCREADKSTASCIRPSSLPRSNGDNTIDEIIECTDHMCPVRVHWHFKNNYMNQWRVKLTVSNYNYNRNYSNWNVLVQHPGFTQKARTYSFNSTRLPTLGLQDGVSLFWGIDYYNNELVHSDKGVVGLVTTEILLDKDPNSFTVSNGWAFPRRIYFNGENCEMPLPDTFPMLPNGSSSLRATYCGFSLLFILLFLALLLL* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0050 445 Pfam COBRA-like protein 53 216 IPR006918 GO:0010215|GO:0031225
Gso6g0050 445 PANTHER COBRA-LIKE PROTEIN 3 439 - -
Gso6g0050 445 PANTHER PROTEIN COBRA 3 439 IPR006918 GO:0010215|GO:0031225
Gso6g0050 445 PIRSF COBRA 1 445 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0050 Gso-Chr6 480719 483031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0050 17 445 COBRA Gene Family AT3G29810 47.059 1.21e-141 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0050 - - vra:106760500 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0055 4 486353 489314 Gso6g0050 6 480719 483031 GST