Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0030 ATGGCTGATCCACAGCCGCTGCTTCTCAACGATTCCGAGCCAACTCAATTTCAAAACACCCGAATCGCCTCCCTTGACGTCTTTCGCGGCCTCTCTGTTTTTCTTATGATATTTGTGGATTATGCTGCTTCGATCTTCCCCATCATTGCTCATGCCCCCTGGAATGGGATTCACTTGGCTGATTTCGTCATGCCTTTTTTTCTTTTCATTGCTGGAATTTCTCTTGCCCTCGTTTATAAGAGAAGGCCTCATAGAACCCAAGCTACATGGAAAGCTTTTGCTAGAGCTCTCAACCTCTTTGCTCTTGGTATTCTTCTTCAAGGTGGCTATTTTCACGGAGTTACTTCCTTGACTTTTGGTGTTGACATTCAAAGAATTCGGTGGCTGGGCATTTTACAGAGGATATCTATTGGATACATTGTTGCAGCTTTATGCGAGATCTGGCTTCCAGCTCCACGATGGAAAGAATTAGGTTTCGTCAAAAGTTACTACTGGCAATGGTTTGTTGCAGTAATATTGTTGGCACTTTACTCTGGATTACTGTATGGTCTATATGTTCCAGATTGGCAGTTTGATGTATCAGCCTCGACCTCTTCATTGCCTCCTATTGGTGGTGGTGATATTTACATGGTGAATTGTTCAGTGAGAGGTGATCTTGGACCTGCCTGTAATTCTGCTGGAATGATTGATCGCTATATTCTTGGTCTTGACCATCTGTATAGAAAGCCTGTTTACAGAAATCTCAAGGGGTGCAATATGTCTGCTAAGGGTCAAGTTTCAGATAGTTCACCTTCATGGTGTCATGCTCCTTTTGACCCAGAAGGCATTTTAAGCTCCATAACAGCTGCAGTTTCGTGCATAATTGGACTTCAGTATGGTCACGTTCTTGCCCATCTACAGGACCACAAAGGGCGCCTATACAACTGGATGTGTTTTTCCCTTTCATTTTTGGCTCTTGGACTGTTTCTGGCATTAATAGGAATTCCTCTAAATAAATCGCTGTACACAGTCAGTTATATGCTACTAACTTCTGCAGCTTCTGGTCTCACATTCATTGCTTTATATTTTCTGGTAGATGTTCATGGTCACAGGCGTTTGACAGCGTTGTTGGAGTGGATGGGAAAACACTCCTTGAGTATATTTGTCATCGTATCTTCAAACTTGGCCGTGATTGCTGTTCAAGGATTTTATTGGACTAAACCCGAAAACAACATTGAAGTGAGCCAAGAAGGCCTGCAGAGGAAGGACTACGTAGACCCTCCTCCAGCCCCTCTCATCGACCTTGCCGAGATCAAGCTCTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCATTGCCACACTCCTCTTCCTCTACGTCACCGTCGCCACCGTCATCGGCCACAAGAAACAGACCGGACCATGCGACGGCGTTGGCCTTCTCGGCATCGCATGGGCCTTCGGTGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATTTCTGGTGGACACATCAACCCTGCGGTGACTTTTGGCCTGTTCCTGGCCCGCAAGGTGTCTCTCATTCGCGCCGTGTTCTACATGGTAGCACAGTGTCTTGGTGCCATCTGCGGTGTTGGGTTGGTGAAGGCCTTCATGAAGCACTCCTACAACTCCCTCGGCGGCGGTGCTAACTCCGTCAGCGCAGGCTACAACAAAGGCAGTGCTCTGGGTGCTGAGATTATCGGCACTTTCGTCCTTGTCTACACCGTTTTCTCAGCTACCGACCCCAAGAGAAGCGCGCGTGACTCCCATGTCCCCGTGTTGGCCCCATTGCCCATTGGGTTTGCCGTTTTCATGGTTCACTTGGCCACCATTCCCATCACCGGTACCGGGATCAACCCAGCCAGGAGCTTGGGTGCAGCTGTTATCTACAACAATGGCAAAGTTTGGGACGAGCATTGGATATTCTGGGTTGGGCCATTGGTGGGAGCTTTGGCGGCGGCGGCATACCACCAGTACATCCTTAGAGCAGGGGCTATTAAGGCCTTGGGTTCATTCAGGAGCAACCCTACCAACTAG 2043 0.4856 MADPQPLLLNDSEPTQFQNTRIASLDVFRGLSVFLMIFVDYAASIFPIIAHAPWNGIHLADFVMPFFLFIAGISLALVYKRRPHRTQATWKAFARALNLFALGILLQGGYFHGVTSLTFGVDIQRIRWLGILQRISIGYIVAALCEIWLPAPRWKELGFVKSYYWQWFVAVILLALYSGLLYGLYVPDWQFDVSASTSSLPPIGGGDIYMVNCSVRGDLGPACNSAGMIDRYILGLDHLYRKPVYRNLKGCNMSAKGQVSDSSPSWCHAPFDPEGILSSITAAVSCIIGLQYGHVLAHLQDHKGRLYNWMCFSLSFLALGLFLALIGIPLNKSLYTVSYMLLTSAASGLTFIALYFLVDVHGHRRLTALLEWMGKHSLSIFVIVSSNLAVIAVQGFYWTKPENNIEVSQEGLQRKDYVDPPPAPLIDLAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVFYMVAQCLGAICGVGLVKAFMKHSYNSLGGGANSVSAGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNGKVWDEHWIFWVGPLVGALAAAAYHQYILRAGAIKALGSFRSNPTN* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0030 680 SUPERFAMILY Aquaporin-like 430 664 IPR023271 -
Gso6g0030 680 Pfam Heparan-alpha-glucosaminide N-acetyltransferase, catalytic 21 145 IPR012429 -
Gso6g0030 680 ProSitePatterns MIP family signature. 498 506 IPR022357 -
Gso6g0030 680 TIGRFAM MIP: MIP family channel proteins 442 658 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso6g0030 680 PRINTS Major intrinsic protein family signature 438 457 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso6g0030 680 PRINTS Major intrinsic protein family signature 480 504 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso6g0030 680 PRINTS Major intrinsic protein family signature 517 536 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso6g0030 680 PRINTS Major intrinsic protein family signature 566 584 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso6g0030 680 PRINTS Major intrinsic protein family signature 602 624 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso6g0030 680 PRINTS Major intrinsic protein family signature 642 662 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso6g0030 680 PANTHER LD22376P 1 408 - -
Gso6g0030 680 CDD MIP 438 662 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso6g0030 680 Pfam Major intrinsic protein 431 658 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso6g0030 680 PANTHER HEPARAN-ALPHA-GLUCOSAMINIDE N-ACETYLTRANSFERASE-LIKE ISOFORM X1 1 408 - -
Gso6g0030 680 Gene3D Glycerol uptake facilitator protein. 423 680 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0030 Gso-Chr6 287652 299131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0030 406 680 Major Intrinsic Protein MIP AT2G16850 89.091 1.84e-174 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0030 - - vra:106761912 1222.22